PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01636g00008.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 306aa    MW: 35831.8 Da    PI: 10.4104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01636g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.8e-16189277598
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++++++ +++ l++p++fa e  +++ +  +++++d + rsW+ kl    +++r+++++GW++F+  n LkegD ++F++++ ++
  Peaxi162Scf01636g00008.1 189 TIQPSNISRHYLRVPRQFALESCLNNWKC-EIIVRD-ERRSWTCKL--YTSGRRTYIGSGWRKFCIVNYLKEGDRLMFEMVS-NG 268
                               57899999**********99996665554.899999.779******..999999*************************988.66 PP

                               E..EEEEE- CS
                        B3  90 felvvkvfr 98 
                               +++v++++ 
  Peaxi162Scf01636g00008.1 269 EKPVLRLYG 277
                               667887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.2740131IPR003340B3 DNA binding domain
PROSITE profilePS508638.47375128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-677120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-777120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20180274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-19182274IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-14184276No hitNo description
SMARTSM010197.5E-15185279IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365185279IPR003340B3 DNA binding domain
PfamPF023621.1E-14188276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEFDVFIFDS SQCNRKYAEY LQEKAQEAHT VEETFENFEF KEKRRPKDIK SSKKESFHAK  60
AATNHRKPLG QSRCRPWSGW IGRVSGRHFG IIRGWSKFRA ANGLQVGDAY KFELIKNGKI  120
PEAYFHHLRG SPSLQPEGKK KDFDVKRISN KVLDSQEKPE SNIKKSRKVF PNVEASKDMH  180
LSHPHFICTI QPSNISRHYL RVPRQFALES CLNNWKCEII VRDERRSWTC KLYTSGRRTY  240
IGSGWRKFCI VNYLKEGDRL MFEMVSNGEK PVLRLYGKQF GKDDKNHRSN RQDNKTVGVH  300
GQGKEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009597618.12e-76(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-17B3 family protein