PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01619g00003.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 414aa    MW: 46613.6 Da    PI: 6.3222
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01619g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.13.5e-100434101373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lLl+cA++ ssg+l+ a+++L+++ +l+s +gd+mqRlaa f+  La   +                    ++   ++ +f 
  Peaxi162Scf01619g00003.1  43 LIQLLLTCANHASSGNLHHADSCLSKILQLSSVTGDSMQRLAAWFASSLAVPSST------------------IVDLDRSRIIFA 109
                               689*******************************************999754333..................4455556678** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               +++P++ f++ + N+ + +a+++++ +Hi+D++ + +  W+++l+ L + p+gpp lRiT v++    +k +le ++ r++k Ae
  Peaxi162Scf01619g00003.1 110 KAFPYMGFAYAVINRILIQAMSEDRIIHIVDLGCGDPKLWVPFLKNLVTLPNGPPYLRITCVSN----NKAMLEDMEIRIKKEAE 190
                               ****************************************************************....9**************** PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvv 239
                               +l++pf+fn  v+ +l++l+l++++vkpgE+la  +vl+lh ll                +++v+  ++ +e+L ++ slsPkv+
  Peaxi162Scf01619g00003.1 191 ALDIPFQFNH-VSVSLKELTLDMIEVKPGESLAFVSVLNLHVLLaeddhinshfglnkknNNNVKDCKRMSEFLAMLHSLSPKVL 274
                               **********.7999******************************************98877777777999************** PP

                      GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                               ++veqeadhn +++++rf+e l+yysalfds++++++  +   eer+ vE++ +g+ei+n+vaceg er+erhe++++W  rl++
  Peaxi162Scf01619g00003.1 275 ILVEQEADHNLNKLVDRFVEGLHYYSALFDSIDTTFGGSNslcEERVAVEQM-FGKEIENMVACEGLEREERHERFGQWLVRLTR 358
                               ***********************************99888899*********.******************************** PP

                      GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                GF+pv+l ++++++ak l++ +++dgy+v +++gsl+++W+drp++svSaW
  Peaxi162Scf01619g00003.1 359 GGFRPVRLWYDIMEDAKKLVEAYGEDGYKVISQRGSLMICWHDRPIYSVSAW 410
                               **************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.7817391IPR005202Transcription factor GRAS
PfamPF035141.2E-9743410IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MNFSSPRVKP DVTLSLTLSS PTSTTTTDVS TTALKPEERG VKLIQLLLTC ANHASSGNLH  60
HADSCLSKIL QLSSVTGDSM QRLAAWFASS LAVPSSTIVD LDRSRIIFAK AFPYMGFAYA  120
VINRILIQAM SEDRIIHIVD LGCGDPKLWV PFLKNLVTLP NGPPYLRITC VSNNKAMLED  180
MEIRIKKEAE ALDIPFQFNH VSVSLKELTL DMIEVKPGES LAFVSVLNLH VLLAEDDHIN  240
SHFGLNKKNN NNVKDCKRMS EFLAMLHSLS PKVLILVEQE ADHNLNKLVD RFVEGLHYYS  300
ALFDSIDTTF GGSNSLCEER VAVEQMFGKE IENMVACEGL EREERHERFG QWLVRLTRGG  360
FRPVRLWYDI MEDAKKLVEA YGEDGYKVIS QRGSLMICWH DRPIYSVSAW NCFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-423541111379Protein SCARECROW
5b3h_A2e-423541110378Protein SCARECROW
5b3h_D2e-423541110378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461877.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A1S3ZCB60.0A0A1S3ZCB6_TOBAC; scarecrow-like protein 3
STRINGXP_009603019.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-99scarecrow-like 3