PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01553g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 212aa    MW: 24247.2 Da    PI: 7.7574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01553g00014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-204999155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              ++++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+  ++g
  Peaxi162Scf01553g00014.1 49 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAATVYDRAAVMIKG 99
                              59********.**********84....35*********************977665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.1E-601212IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.00E-3249107No hitNo description
SMARTSM003803.4E-3750113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3050108IPR001471AP2/ERF domain
PROSITE profilePS5103223.76250107IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2250108IPR016177DNA-binding domain
PfamPF008472.2E-135097IPR001471AP2/ERF domain
PRINTSPR003676.1E-105162IPR001471AP2/ERF domain
PRINTSPR003676.1E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVRRVKRYVT EINFTHQLPE SPKQDSSQPQ TSNKKRSLPS SGNDVSSRKK FRGVRQRPWG  60
RWAAEIRDPT RGKRVWLGTY DTPEEAATVY DRAAVMIKGP DAVTNFPLVS PVMKYTEKRI  120
KKLTELKPEP IVDRQVKSTH VASKDEALSP TSVLRSHDFA PFDDFGFSEL DAFGFDIDID  180
STFGFAGFGM SEKYFAEEFS EFDFDDFSLE VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2149108464ATERF1
3gcc_A6e-2149108464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767000.11e-104PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_016487564.11e-104PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046823e-70PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S4BF981e-103A0A1S4BF98_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A1U7VYC21e-103A0A1U7VYC2_NICSY; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009767000.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.12e-30cytokinin response factor 6