PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01514g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | Dof | ||||||||
Protein Properties | Length: 237aa MW: 24849.6 Da PI: 7.316 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 7.2e-39 | 30 | 89 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWt+GG+lrn+PvGgg+rkn +ss Peaxi162Scf01514g00005.1 30 PENLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGTLRNIPVGGGTRKNSSSS 89 57899***************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 29 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-33 | 32 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.488 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSSEVGGADR RPATKLLAAP ANGTTRPCEP ENLPCPRCDS TNTKFCYYNN YNLSQPRHFC 60 KSCRRYWTRG GTLRNIPVGG GTRKNSSSSH KRARFRSAQV QEQPENATPI SCVSGSGQEF 120 GSVHETGPGQ VSGSGLMMGC GVNLNECVQE ANGTFTSLLT GQMGGGGLMP LGGFGLGLGG 180 FGLGHLDWPM VEQVVSGGHG GDGNGNDKWQ LSSGDDDEGC FGNWPDLAIS APGTSLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592897.1 | 1e-79 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Refseq | XP_016447560.1 | 1e-79 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
TrEMBL | A0A1S3Y655 | 3e-78 | A0A1S3Y655_TOBAC; dof zinc finger protein DOF3.4-like | ||||
STRING | XP_009592897.1 | 5e-79 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 4e-35 | TARGET OF MONOPTEROS 6 |