PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01487g00004.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ERF

Protein Properties

Length: 78aa MW: 8988.22 Da PI: 6.452

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01487g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29.5	1.9e-09	29	68	2	45
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 +y GVr ++ +gr+ eIr+p + r + g+f+taeeAa a Peaxi162Scf01487g00004.1 29 RYLGVRCRP-WGRYSMEIREPQ----SkERRWRGTFDTAEEAACA 68 588*999.******93....2467777*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	8.5E-17	29	71	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.038	29	78	IPR001471	AP2/ERF domain
SMART	SM00380	5.1E-5	29	76	IPR001471	AP2/ERF domain
CDD	cd00018	1.18E-14	29	68	No hit	No description
SuperFamily	SSF54171	1.57E-11	30	72	IPR016177	DNA-binding domain
PRINTS	PR00367	1.8E-7	30	41	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-7	52	68	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MTSPPEIDRQ NSFPGKNNDP DYLVGGIVRY LGVRCRPWGR YSMEIREPQS KERRWRGTFD 60 TAEEAACALE LCVMACVY

Functional Description ? help Back to Top
Source	Description
UniProt	Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16339853, ECO:0000269\|PubMed:17056621, ECO:0000269\|PubMed:17376809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034073.1	3e-19	PREDICTED: ethylene-responsive transcription factor ESR2-like
Refseq	XP_022889386.1	2e-19	ethylene-responsive transcription factor ESR1-like
Swissprot	Q9FYK5	2e-16	ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBL	A0A1R3GQC4	8e-18	A0A1R3GQC4_COCAP; Uncharacterized protein
TrEMBL	R4IRM5	7e-18	R4IRM5_9ROSI; ERF61
TrEMBL	R4IRN1	7e-18	R4IRN1_9ROSI; ERF61
STRING	POPTR_0008s19030.1	2e-18	(Populus trichocarpa)
STRING	GLYMA01G03110.2	2e-18	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA25518	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24590.1	3e-13	DORNROSCHEN-like

Publications ? help Back to Top
Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Thoma R,Chandler JW Polarity in the early floral meristem of Arabidopsis. Plant Signal Behav, 2015. 10(4): p. e992733 [PMID:25806573] Comelli P,Glowa D,Chandler JW,Werr W Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response. J. Exp. Bot., 2016. 67(1): p. 143-55 [PMID:26428063] Seeliger I, et al. The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition. Mol. Genet. Genomics, 2016. 291(5): p. 1835-49 [PMID:27277595] Chandler JW,Werr W DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis. J. Exp. Bot., 2017. 68(13): p. 3457-3472 [PMID:28859377] Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin. Front Plant Sci, 2017. 8: p. 1841 [PMID:29123539]