PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01475g00015.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

WOX

Protein Properties

Length: 273aa MW: 30700.3 Da PI: 6.0465

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01475g00015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.2	1.1e-21	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe+ n +ps++++++++++l +++e++V++WFqNrRa+ k+ Peaxi162Scf01475g00015.1 93 RQRWTPTPMQLQILERIFEQgNGTPSKQKIKDITSELsqhgQISETNVYNWFQNRRARSKR 153 89***************99************************************97 PP
2	Wus_type_Homeobox	101.9	4.5e-33	93	155	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Peaxi162Scf01475g00015.1 93 RQRWTPTPMQLQILERIFEQGNGTPSKQKIKDITSELSQHGQISETNVYNWFQNRRARSKRKQ 155 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-18	89	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.078	89	154	IPR001356	Homeobox domain
SMART	SM00389	1.0E-14	91	158	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-19	92	157	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-19	93	153	IPR001356	Homeobox domain
CDD	cd00086	1.46E-14	93	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEWEKQQQQQ PPQMVEELAG GGGGGGSGMF VKVMTDEQME VLRKQIAVYA TICEQLVDLH 60 KSMASQHDLA GARLGNLYCD PLVMSAGHKI TGRQRWTPTP MQLQILERIF EQGNGTPSKQ 120 KIKDITSELS QHGQISETNV YNWFQNRRAR SKRKQQVTTT NNTESEVETE VESPNEKKTK 180 PEDLQSPHMT TTRAEDLGYQ NPEVSSGMHS LDPRTSKHEP LFPSESSSKP AGSYGEMSFY 240 GMSNPRMDQL MGKMEVPGSY HPYLHAEDYN MTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215450	0.0	AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340846.1	1e-173	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	3e-88	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M0ZMN1	1e-172	M0ZMN1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400003980	1e-173	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-82	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]