PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01390g00037.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 396aa    MW: 43761.2 Da    PI: 4.8982
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01390g00037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS211.44.9e-651523961245
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalk 82 
                               lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++La rla  +  +++  +++ + s+++   +++  al+
  Peaxi162Scf01390g00037.1 152 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFMQGLADRLALvQPLGTVGYIATPAMSKTDiaLEKKEEALR 236
                               689**************************************************9844445555555555555556688899999* PP

                      GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetg 162
                               l++e++P ++f+h++aN+ Ilea+ege+ +H++D+++s    +G QW  L+q+La+Rp++pp +lRiT+vg+      e+ + +g
  Peaxi162Scf01390g00037.1 237 LLYEICPHIQFGHFVANSSILEAFEGESFIHVVDLGMSiglpHGHQWRRLIQSLANRPGQPPrRLRITAVGQ----TIEKFQVIG 317
                               ***********************************9874444778*************877779********....99******* PP

                      GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                               + L+ +A +lg+++ef++ v+++le+l++++++v  gE+l+Vn++lqlh +++es    +   +vL+++ +lsPk++v+veq+
  Peaxi162Scf01390g00037.1 318 DELEAYAGSLGINLEFSA-VESNLENLKPKDIKVYDGEVLVVNSILQLHCVVKESRGALN---SVLQVIHELSPKILVLVEQD 396
                               ******************.79*******************************88877777...8*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.811126396IPR005202Transcription factor GRAS
PfamPF035141.7E-62152396IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MTYDMVTGFL SLEPCNGDQI GYEPLEYYLS HKELAYSLNP YTAVLKRNAA SMISTLSNEK  60
KKMTYDMVTG FLSLEPCNGD QIGYEPLEYY LSHKELAYSL NPYTAVLKRN AASMISTLYL  120
AAEAIEEAAS DIIGSERRGC DEDQENGEGM KLVQLLITCA EAVACRDKSR ASVLLSELRA  180
SALVFGTSFQ RVASCFMQGL ADRLALVQPL GTVGYIATPA MSKTDIALEK KEEALRLLYE  240
ICPHIQFGHF VANSSILEAF EGESFIHVVD LGMSIGLPHG HQWRRLIQSL ANRPGQPPRR  300
LRITAVGQTI EKFQVIGDEL EAYAGSLGIN LEFSAVESNL ENLKPKDIKV YDGEVLVVNS  360
ILQLHCVVKE SRGALNSVLQ VIHELSPKIL VLVEQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-321343961252Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603492.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_016441386.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S3XN640.0A0A1S3XN64_TOBAC; DELLA protein RGL1-like
STRINGXP_009603492.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-36RGA-like 1