PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01346g00018.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family CO-like
Protein Properties Length: 405aa    MW: 46403.8 Da    PI: 5.3067
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01346g00018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.66.8e-101659340
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                              +r C+++ +k+++++C  ++ +lC++C ++ H+       H++v
  Peaxi162Scf01346g00018.1 16 ARACDNCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 59
                              578*****************************667888888876 PP
2CCT68.61.7e-23351394144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Peaxi162Scf01346g00018.1 351 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 394
                               9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.8E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0351461IPR000315B-box-type zinc finger
PfamPF006432.9E-81659IPR000315B-box-type zinc finger
CDDcd000211.17E-101761No hitNo description
PROSITE profilePS5101716.152351393IPR010402CCT domain
PfamPF062035.5E-18351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSSKKTLANA VGAKTARACD NCIRKRARWY CAADDAFLCQ SCDSSVHSAN PLARRHERVR  60
LKAASFKSSN EFPNLESSNS ATSWHNGFTR KARTPRNGKN SRKVKSIDEE EIRNPIHLVV  120
PEILSDENSH DENEEQLLYR VPTFDPNNGN EYSNEMKNDF SDIDMNMFHG MPNIQTVKEL  180
EEFAADVESL LGKGLDDEES FNYMEGLGFM EDCVKVENEG EVEIDMASTS FDNQVDYSEI  240
DMAGETFELK FDYDSSIISF EEDINKGEVG AVMKNNDDGK SKRSSNILLN LDYGGVLNAW  300
DDQRSPWTTG ERPELDFNEC WPVCMGNCGK YHTYEDMEIL KGHGPVVDEG REARVLRYRE  360
KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRTNFAAVP IPFHK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361377RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226178.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD02e-95COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A3T0YP550.0A0A3T0YP55_PETHY; Zinc finger protein CONSTANS-like 16
STRINGXP_009765495.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-98B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]