PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01324g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 238aa MW: 27738.2 Da PI: 8.7339 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 216.8 | 1.1e-66 | 32 | 237 | 123 | 336 |
GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlv 207 lQWp+L+q+LasRp++p + RiTg+g+ sk+ l +g+rLa+f e+l++ fefn+ +++rl+d++l++L+vk+gE +aVn+v Peaxi162Scf01324g00011.1 32 LQWPSLFQSLASRPNPPIHARITGIGE----SKQDLIDIGDRLAEFVEALNLAFEFNL-IVDRLKDVRLWMLHVKEGEIVAVNCV 111 8**************************....9*************************9.7************************* PP GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 lq+h++l +s +++L l++s++ +++ ++eqea+hn++s+ +r++++l+yy+++f s+ +lp es+ r k+E++ ++r Peaxi162Scf01324g00011.1 112 LQMHKILYDSSGGIL--RDFLGLIRSTNRTIILMAEQEAEHNEPSLEARLFNSLKYYAVVFYSIGFSLPLESSVRFKIEEM-FAR 193 ******966655444..79**************************************************************.*** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 ei+n+++ceg++r+ rhe ++kWr+ +++ GF+ + +se ++ q Peaxi162Scf01324g00011.1 194 EIRNIISCEGRNRIGRHECFGKWRKLMKQGGFRCIGVSEMEMLQ 237 ***************************************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 31.579 | 1 | 238 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-64 | 32 | 237 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MRLIQWVGIQ WNRCTSWEQQ QEYLTRRAKA RLQWPSLFQS LASRPNPPIH ARITGIGESK 60 QDLIDIGDRL AEFVEALNLA FEFNLIVDRL KDVRLWMLHV KEGEIVAVNC VLQMHKILYD 120 SSGGILRDFL GLIRSTNRTI ILMAEQEAEH NEPSLEARLF NSLKYYAVVF YSIGFSLPLE 180 SSVRFKIEEM FAREIRNIIS CEGRNRIGRH ECFGKWRKLM KQGGFRCIGV SEMEMLQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-29 | 32 | 231 | 141 | 335 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009279 | 0.0 | AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence. | |||
GenBank | AP010263 | 0.0 | AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence. | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016502025.1 | 1e-125 | PREDICTED: scarecrow-like protein 28, partial | ||||
Refseq | XP_018628640.1 | 1e-124 | PREDICTED: scarecrow-like protein 28 isoform X2 | ||||
Refseq | XP_019238297.1 | 1e-123 | PREDICTED: scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 1e-87 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | A0A1J6JVQ6 | 1e-122 | A0A1J6JVQ6_NICAT; Scarecrow-like protein 28 | ||||
TrEMBL | A0A1S4CLM7 | 1e-123 | A0A1S4CLM7_TOBAC; scarecrow-like protein 28 | ||||
STRING | PGSC0003DMT400007879 | 1e-123 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5568 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 5e-90 | GRAS family protein |