PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01302g00033.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 365aa    MW: 39702.9 Da    PI: 5.3148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01302g00033.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-185499147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W++eEd +l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  Peaxi162Scf01302g00033.1 54 KGPWSPEEDAILSKLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 99
                              79******************************.***********985 PP
2Myb_DNA-binding57.33.6e-18106150147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               r++++ eEd l+++a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Peaxi162Scf01302g00033.1 106 RKPFSDEEDRLILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 150
                               789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.53849100IPR017930Myb domain
SuperFamilySSF466892.3E-3052147IPR009057Homeodomain-like
SMARTSM007175.6E-1553102IPR001005SANT/Myb domain
PfamPF002496.7E-175499IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2755107IPR009057Homeodomain-like
CDDcd001674.81E-145698No hitNo description
PROSITE profilePS5129427.854101155IPR017930Myb domain
SMARTSM007171.3E-17105153IPR001005SANT/Myb domain
PfamPF002495.6E-16106150IPR001005SANT/Myb domain
CDDcd001672.50E-13108151No hitNo description
Gene3DG3DSA:1.10.10.606.0E-24108154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEIHSLEILE TSNPVEGGSY GGDSGGEDEM LENESGSSEN VVKKNKRTSG ERVKGPWSPE  60
EDAILSKLVS NFGARNWSLI ARGIPGRSGK SCRLRWCNQL DPSVKRKPFS DEEDRLILQA  120
HAIHGNKWAS IARLLPGRTD NAIKNHWNST LRRRHNGKLR SDPSNVLEDV SAEKSKASSE  180
ETQSCGDVNS LKAIEGKDVS SQENQEDNHH EDKSEAEVQR SDAANDPPTL VRPVARISAF  240
SVYGSLDVPE AQIQTPRLTP VQAPDLGISK LLEGCFTDRL VPHQCGHGCC GNASQENNGS  300
SLLGPEFVDY AEPPSFSSHE LAALATEISN VAWCKSGLEN SNIEVICNPT TRATSGTSLL  360
PNRPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-40531546107B-MYB
1h88_C8e-405115455158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-405115455158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613649.10.0PREDICTED: myb-related protein B
RefseqXP_016450102.10.0PREDICTED: myb-related protein B-like
SwissprotQ425759e-93MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A1S3YDN10.0A0A1S3YDN1_TOBAC; myb-related protein B-like
STRINGXP_009613649.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.16e-93myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]