PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01257g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 419aa MW: 47069.4 Da PI: 7.0543 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 98.7 | 3.6e-31 | 94 | 200 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+kv tpsdv+k++rlv+pk++ae++ +++++ + l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+ Peaxi162Scf01257g00004.1 94 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldssSNDHKAGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDI 178 89*****************************9556667889******************************************** PP EEEEE-.SS.SEE..EEEEE-S CS B3 80 vvFkld.gr.sefelvvkvfrk 99 v F++ g+ + +l++ ++r+ Peaxi162Scf01257g00004.1 179 VSFQRGaGElGKHRLFIDWRRR 200 ****776888999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-40 | 85 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-30 | 91 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.31E-25 | 92 | 183 | No hit | No description |
Pfam | PF02362 | 9.2E-29 | 94 | 200 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-22 | 94 | 201 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.353 | 94 | 201 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MNFLTSTRGI QEQEGGSSSA KGMYPFSQSS SSSQQIPLPL SYHNPRSSNE SKELMLMDSS 60 NNHGDSEPAD EVVDHGTRAN TASASVMIER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF 120 PLDSSSNDHK AGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS 180 FQRGAGELGK HRLFIDWRRR PDAPDHMMNP YHLSNWNHHH RLFLQPFQTP LSTHSRLLLE 240 GSSISQQHYS HYPHSYSYGI GNTSPYYDTC FSNTSTAAVV NANPCEGRSA SQFVLPQQFE 300 INMQMQRGST VDVEPMVYNS VPVVQGKVAA KRLRLFGVNM DCPMISNLDD SDHDMFPSTT 360 SLLTPTTTAV PYSHFSSSST STPNLLHSRN FNNCSPLQVV PPEELSDKGK ASMSLDLDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-63 | 87 | 201 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-63 | 87 | 201 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF668648 | 1e-133 | KF668648.1 Nicotiana benthamiana NGATHAb mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803160.1 | 1e-162 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | Q6EU30 | 4e-68 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
TrEMBL | A0A1U7YWM8 | 1e-160 | A0A1U7YWM8_NICSY; B3 domain-containing transcription factor NGA1-like | ||||
STRING | XP_009803160.1 | 1e-161 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2817 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 2e-65 | B3 family protein |
Publications ? help Back to Top | |||
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