PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01221g00042.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 258aa    MW: 29157.2 Da    PI: 9.3009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01221g00042.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde+l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Peaxi162Scf01221g00042.1 14 KGAWTKEEDERLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                              79******************************99************97 PP
2Myb_DNA-binding58.31.7e-1867111147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Peaxi162Scf01221g00042.1  67 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                               89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.216961IPR017930Myb domain
SMARTSM007175.1E-141363IPR001005SANT/Myb domain
SuperFamilySSF466897.19E-3013108IPR009057Homeodomain-like
PfamPF002492.1E-151461IPR001005SANT/Myb domain
CDDcd001677.57E-111661No hitNo description
PROSITE profilePS5129428.82162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2765116IPR009057Homeodomain-like
SMARTSM007172.5E-1766114IPR001005SANT/Myb domain
PfamPF002491.0E-1667111IPR001005SANT/Myb domain
CDDcd001671.85E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEDEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG  120
IDPSTHRIMN EPSTQKVTTI SFAAGNEDIK DQKISIKAEF EQIKDDEIIS KPIKEQCPDL  180
NLELKISPPY QQHSDRALQQ STTGSGGAST ICFTCSLGLK NNKGCSCSRN RSMNVAGYDF  240
LGLKTNGLDY RTLETRTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4471430.0HM447143.1 Petunia x hybrida R2R3-MYB transcription factor (MYB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603939.11e-155PREDICTED: myb-related protein 308-like
SwissprotP813931e-118MYB08_ANTMA; Myb-related protein 308
TrEMBLF1B2810.0F1B281_PETHY; R2R3-MYB transcription factor
STRINGXP_009603939.11e-155(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-109myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]