PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01194g00013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 292aa    MW: 33902.6 Da    PI: 6.5097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01194g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.8e-173582148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT eEd  l++ ++++G g+W++ ar  g++Rt+k+c++rw++yl
  Peaxi162Scf01194g00013.1 35 RGSWTVEEDFTLINHIALHGEGRWNSLARSSGLKRTGKSCRLRWLNYL 82
                              89********************************************97 PP
2Myb_DNA-binding51.52.4e-1688131146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Peaxi162Scf01194g00013.1  88 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 131
                               7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.53082IPR017930Myb domain
SuperFamilySSF466891.11E-2932129IPR009057Homeodomain-like
SMARTSM007171.1E-143484IPR001005SANT/Myb domain
PfamPF002495.3E-153582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-203689IPR009057Homeodomain-like
CDDcd001672.43E-103782No hitNo description
PROSITE profilePS5129423.24683137IPR017930Myb domain
SMARTSM007171.3E-1487135IPR001005SANT/Myb domain
PfamPF002494.8E-1588131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2390136IPR009057Homeodomain-like
CDDcd001677.87E-7108131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDHQHAKVDL RSKEAACSTN NIIQKVEEDD MDFKRGSWTV EEDFTLINHI ALHGEGRWNS  60
LARSSGLKRT GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR  120
TDNEIKNYWR TRVQKHAKQL KCDVNSKQFK DTLRYLWMPR LVERIQASNS SKNQVIQQTS  180
NNNISNNIIP SMSFTQENSS TTTSSENSLG TQVISQVSDT SDCCYNYSTI NQSDTLCYGE  240
SLTSPTGYFH QEGALDFRTV DIDDNQQTNQ FLDVSDNLWN IEDMWFLQEQ LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-243212924120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799770.11e-133PREDICTED: transcription factor MYB108-like
RefseqXP_016494481.11e-133PREDICTED: transcription factor MYB108-like
TrEMBLA0A1S4C0051e-131A0A1S4C005_TOBAC; transcription factor MYB108-like
TrEMBLA0A1U7YLQ81e-131A0A1U7YLQ8_NICSY; transcription factor MYB108-like
STRINGXP_009799770.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.13e-85myb domain protein 78