PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01149g00023.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 421aa    MW: 47066.4 Da    PI: 4.6739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01149g00023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-20128178155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++y+GVr++  +g+WvAeIr+p     +   r +lg+fgta eAa a+++a+++++g
  Peaxi162Scf01149g00023.1 128 CQYRGVRQRT-WGKWVAEIREP-----HrgSRLWLGTFGTAIEAALAYDEAARAMYG 178
                               68*****999.**********6.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.47E-30128187No hitNo description
PfamPF008475.6E-14128178IPR001471AP2/ERF domain
PROSITE profilePS5103220.784129186IPR001471AP2/ERF domain
SMARTSM003802.7E-34129192IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-20129187IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-30129187IPR001471AP2/ERF domain
PRINTSPR003672.2E-9130141IPR001471AP2/ERF domain
PRINTSPR003672.2E-9152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MPGIDVTIAR DGPVLKLHQQ HMLIQQVTEK EISQAVKALP KDKNSDMAIV DQATNMISLP  60
LDYARKQKSR SRKDAPKNVA QTIAKWKEFN EKLDLTSDDG KKLVRKVPAK GSKKGCMKGK  120
GGPDNSRCQY RGVRQRTWGK WVAEIREPHR GSRLWLGTFG TAIEAALAYD EAARAMYGPC  180
ARLNLPDYPS SNEWSKDDSS LPTVSGSDSA TGSSVSEVYP ADELRCRVDV PKIKHEDGES  240
ESTTKSALYE AGTPLSSMKE VTKDETKGVW GEKEILEAKE EPFITFDYDQ LKNGASSHDN  300
VCWDDEMFDV EELLGVLDST PLDAPTSNEV SGSVPLQQEQ HAYNNNQKPN VSYQLQNAAY  360
DDDLFSNLPY PLQNSDGKQL EDLQQKDQQV PIMDGYDFDF LRPGRQEDFN FSLDDLGLLD  420
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-17129186260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245341.11e-174PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1J6IF771e-173A0A1J6IF77_NICAT; Dehydration-responsive element-binding protein 2a
STRINGXP_009788693.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.14e-37DRE-binding protein 2A