PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01142g00028.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 493aa    MW: 54683.1 Da    PI: 6.1626
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01142g00028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.87.4e-10216272155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+ ++ a++k++g
  Peaxi162Scf01142g00028.1 216 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARSYDLAALKYWG 272
                               57*******************4444.2344336655.7799999*************98 PP
2AP249.98.1e-16315366155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Peaxi162Scf01142g00028.1 315 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 366
                               57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.48E-19216282No hitNo description
PfamPF008471.1E-7216272IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-14216282IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-11217281IPR001471AP2/ERF domain
PROSITE profilePS5103217.042217280IPR001471AP2/ERF domain
SMARTSM003801.6E-21217286IPR001471AP2/ERF domain
PRINTSPR003673.2E-6218229IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18315375IPR016177DNA-binding domain
CDDcd000185.05E-12315374No hitNo description
PfamPF008474.2E-10315366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18316374IPR001471AP2/ERF domain
PROSITE profilePS5103219.151316374IPR001471AP2/ERF domain
SMARTSM003801.6E-31316380IPR001471AP2/ERF domain
PRINTSPR003673.2E-6356376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAPDNNNWLS FSLSSMEMLN SSSHESSMLQ SNMKTAAPSY DGSSSAYTHN NYYFADNFFP  60
QGQVMYSEGE KIGDSLNFQG YVESQIHQQQ PPKLADFFGG ETETQDSSLT HIYDHGGSTY  120
NFNEQQDLKN MAGFQTFSTN SGSEVDDSQV MGTTHEFVGQ SMDSSNELGY SQCNITAGPL  180
SLAVNTSSTS EEKAIVAVVD SESCKKISDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR  240
REGQARKGRQ GGYDKEDKAA RSYDLAALKY WGPTATTNFP VSSYAKELEE MKHMTKQEFI  300
ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDIA  360
AIKFRGVNAV TNFEMNRYDV EAIMNSALPI GGAAKRLKIS LESEQKQSLN NNQQTQCNSS  420
SINFGGMPGP VSAIPCGVPF DATQPFYHHN FFHHLHSSND GSSDTSGPMT NMVSAMPLLQ  480
SPAEVFIWPH QSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603183.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-165AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S4BYD70.0A0A1S4BYD7_TOBAC; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_009603183.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-156AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]