PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01132g00339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | G2-like | ||||||||
Protein Properties | Length: 338aa MW: 38086.5 Da PI: 9.0233 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.8 | 1.8e-26 | 63 | 112 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LG AtPk +l++m++kgL ++hvkSHLQ+YR+ Peaxi162Scf01132g00339.1 63 PRLRWTPDLHLRFVHAVERLG----ATPKLVLQMMNIKGLNIAHVKSHLQMYRS 112 8*******************5....9***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 59 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.295 | 59 | 115 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-12 | 61 | 113 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-18 | 63 | 114 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-9 | 64 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEDSGETGCN YSKTSSTTGK NEDEEDLNAS SKIKDGGSSS NSTVEEESEK KHSVRPYVRS 60 KMPRLRWTPD LHLRFVHAVE RLGATPKLVL QMMNIKGLNI AHVKSHLQMY RSKKLDDQGQ 120 AIAHHRIFME GGDPNIYNLS QLPMLPTFHQ RLNSTFRYED ASWKSHGNWT RQGFYTTLSE 180 RIFGNNHGRE ANQDLYTRIP SFISERSTSQ TNVAKDEMGI FHIAAKAQAR ATCHGKGSFV 240 PPDLERTKNL QKLITPLKRK ASKYCDLDLN LSLAVKPRNE EIINHDDNND DNDNVSSLSL 300 SLSSPMSSSR VTRFKLEDAS NATTENSRRG ASTLDLTL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240197 | 7e-38 | AC240197.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-208l2 map 10, complete sequence. | |||
GenBank | HG975448 | 7e-38 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975449 | 7e-38 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975521 | 7e-38 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. | |||
GenBank | HG975522 | 7e-38 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621839.1 | 1e-154 | PREDICTED: uncharacterized protein LOC104113394 | ||||
Refseq | XP_009621844.1 | 1e-154 | PREDICTED: uncharacterized protein LOC104113394 | ||||
Refseq | XP_009804663.1 | 1e-154 | PREDICTED: two-component response regulator ARR10-like | ||||
Refseq | XP_016478876.1 | 1e-154 | PREDICTED: two-component response regulator ORR24-like | ||||
Refseq | XP_016503328.1 | 1e-154 | PREDICTED: uncharacterized protein LOC107821409 | ||||
Refseq | XP_016503329.1 | 1e-154 | PREDICTED: uncharacterized protein LOC107821409 | ||||
TrEMBL | A0A1S4AQL4 | 1e-152 | A0A1S4AQL4_TOBAC; two-component response regulator ORR24-like | ||||
TrEMBL | A0A1S4CQR0 | 1e-152 | A0A1S4CQR0_TOBAC; uncharacterized protein LOC107821409 | ||||
TrEMBL | A0A1U7YNJ2 | 1e-152 | A0A1U7YNJ2_NICSY; two-component response regulator ARR10-like | ||||
STRING | XP_009804663.1 | 1e-153 | (Nicotiana sylvestris) | ||||
STRING | XP_009621839.1 | 1e-153 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4382 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-49 | G2-like family protein |