PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01132g00321.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 414aa    MW: 47354.6 Da    PI: 4.7896
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01132g00321.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS118.96.2e-371273771256
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l +lL +  ea++++++ela+ ++  ++   +p g++++R+ +     L a++ +         + s  +++ s++   a+k+f+
  Peaxi162Scf01132g00321.1 127 LHHLLAAYGEAIENDHKELAEVIIRSIKGKINPLGESLERVCS----NLFAKIED---------QESYLRQEASKNLEVAFKAFY 198
                               5799999*********************************986....58889998.........2222333336667778999** PP

                      GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLa 166
                               +++Pi kf+h++aN+aI ea+ ++ e++Hi+Dfd+++G+QWp++++a++++++    lR T +++ e++   +  + eet++rL 
  Peaxi162Scf01132g00321.1 199 QIFPIGKFAHFAANSAIIEAMPSDaETIHIVDFDMGEGIQWPSIIEAMSQKRK---ALRFTSLKKTEEEstsDLCKFEETKRRLL 280
                               *********************98889***********************9865...5******99888776677789******** PP

                      GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.....vvvvv 242
                               ++A+++   ++ +v  + ++e+l+ e+ r+k+     E l+ n++++l ++ +    ++    e+Lkl ++l ++     +v++ 
  Peaxi162Scf01132g00321.1 281 DYAKTMPFGLRLQV-EEMTIEELSSEMRRMKKrgkgSEWLVFNCMFKLPHMGKTMCRIQA--LEFLKLARELLANssrkgLVTFG 362
                               ******99999998.888*****99999999999999**************955555555..99******996653344478888 PP

                      GRAS 243 eqeadh.nsesFler 256
                               + ea   ns++  ++
  Peaxi162Scf01132g00321.1 363 DGEAMDeNSHNTTKE 377
                               887544377665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.672101414IPR005202Transcription factor GRAS
PfamPF035142.2E-34127377IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MMQSEQLLHN SWSSTFHQSD LYGIQIDPNE SQKHSLSYSS FNSNDQDFTS LFQDDVFDDL  60
SMDDLEFVDV CRWLNDSESE GNETMKVSFD IQKDGDLWSP ALSGVSSETS ITLPSNSKEN  120
MDTQMSLHHL LAAYGEAIEN DHKELAEVII RSIKGKINPL GESLERVCSN LFAKIEDQES  180
YLRQEASKNL EVAFKAFYQI FPIGKFAHFA ANSAIIEAMP SDAETIHIVD FDMGEGIQWP  240
SIIEAMSQKR KALRFTSLKK TEEESTSDLC KFEETKRRLL DYAKTMPFGL RLQVEEMTIE  300
ELSSEMRRMK KRGKGSEWLV FNCMFKLPHM GKTMCRIQAL EFLKLARELL ANSSRKGLVT  360
FGDGEAMDEN SHNTTKELVN ERATPLKVKI EEERSHQMVL EWKGTPLVKV STWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-1313631228212Protein SCARECROW
5b3h_A8e-1313631227211Protein SCARECROW
5b3h_D8e-1313631227211Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226130.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A314KSF50.0A0A314KSF5_NICAT; Nodulation-signaling pathway 2 protein
STRINGPGSC0003DMT4000685071e-169(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.18e-19GRAS family protein