PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01101g00048.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 321aa    MW: 36004.6 Da    PI: 6.8958
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01101g00048.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd++l++++k++G g+W++ ++  g++R++k+c++rw +yl
  Peaxi162Scf01101g00048.1 14 KGPWTPEEDQKLINYIKKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding56.56.4e-1867112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Peaxi162Scf01101g00048.1  67 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-27564IPR009057Homeodomain-like
PROSITE profilePS5129418.671961IPR017930Myb domain
SuperFamilySSF466892.62E-3211108IPR009057Homeodomain-like
SMARTSM007171.9E-161363IPR001005SANT/Myb domain
PfamPF002492.6E-181461IPR001005SANT/Myb domain
CDDcd001671.50E-131661No hitNo description
PROSITE profilePS5129427.18762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2865117IPR009057Homeodomain-like
SMARTSM007175.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1667112IPR001005SANT/Myb domain
CDDcd001676.93E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRSPCCDET GLKKGPWTPE EDQKLINYIK KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHAILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHRPRT DIFNSLPHLI ALANLKELVE QSEVARIKYL QYLLQPSMAA NLANSMSTSN  180
TCSVANISDM EAYNNLLNIG TNHLENSTNN IPPPSTTLQA IQDSITFSHL PELQATPNCN  240
FQNSLNEENM VQTHVISQGE NTPTSPWQLP SSLSPPENDN QPINSYINNI GGSCNPPFFG  300
GAHPSVWPEI LLEDSLFQDI A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260888.11e-148PREDICTED: transcription factor MYB39-like
SwissprotQ9SBF31e-104MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A314LAP41e-147A0A314LAP4_NICAT; Transcription factor myb39
STRINGXP_009778686.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-103myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]