PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01100g00115.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | SBP | ||||||||
Protein Properties | Length: 98aa MW: 11467 Da PI: 8.2093 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 26.6 | 1.6e-08 | 51 | 72 | 2 | 23 |
-SSTT-----TT--HHHHHTT- CS SBP 2 CqvegCeadlseakeyhrrhkv 23 Cqve+C+ad++++k y+rrhk Peaxi162Scf01100g00115.1 51 CQVEQCTADMADVKPYYRRHKW 72 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.9E-8 | 45 | 71 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.18E-7 | 49 | 75 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MEINRWEGKR SMNDVEEEED DDNLEEDNKR KRVLILSERK LFGGGPAQPS CQVEQCTADM 60 ADVKPYYRRH KWTPAAILSA MKQWKNFVKQ LLAPKKNS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC073301 | 1e-51 | LC073301.1 Nicotiana tabacum NtabSPL3b mRNA for squamosa promoter binding protein NtabSPL3b, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027770686.1 | 1e-30 | squamosa promoter-binding protein 1 isoform X4 | ||||
TrEMBL | A0A2K9ZXH2 | 4e-46 | A0A2K9ZXH2_PETHY; Squamosa promoter binding-like protein CNR | ||||
STRING | Solyc02g077920.2.1 | 1e-29 | (Solanum lycopersicum) |