PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01099g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17918.6 Da PI: 9.1449 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.2e-20 | 14 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r +lg+f+t eeAa a+++a+++l+g Peaxi162Scf01099g00011.1 14 CHFRGVRKRP-WGRYAAEIRDpWK----KTRRWLGTFDTVEEAALAYDEAARSLRG 64 689*******.**********883....5999**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.81E-30 | 14 | 72 | No hit | No description |
Pfam | PF00847 | 3.1E-13 | 14 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-33 | 15 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.72 | 15 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 15 | 73 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-30 | 15 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MCGSLQTVRT FKECHFRGVR KRPWGRYAAE IRDPWKKTRR WLGTFDTVEE AALAYDEAAR 60 SLRGPKAKTN FELDPIATGP IAPPLSLMKP AFGPETLPHW CFQAFYGSGL EHKSTVATSE 120 YIGYKIEGVG VVMNEHEKKI ESEKKPFLFD LNLPAPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 12 | 73 | 2 | 64 | ATERF1 |
3gcc_A | 1e-19 | 12 | 73 | 2 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095564.1 | 8e-66 | ethylene-responsive transcription factor 12-like | ||||
TrEMBL | A0A068U5A2 | 2e-64 | A0A068U5A2_COFCA; Uncharacterized protein | ||||
STRING | XP_009788813.1 | 7e-65 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14136 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-32 | ERF domain protein 12 |