PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01073g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28173.3 Da PI: 9.0697 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.5 | 5e-08 | 155 | 197 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r RR++i +++ L++l+P +K++ a++L +A++Y+k L Peaxi162Scf01073g00009.1 155 IAARHRREKISEKMRVLQRLVPGG-----TKMDTASMLDEAIHYMKFL 197 56799*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.831 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.65E-10 | 154 | 202 | No hit | No description |
SMART | SM00353 | 3.2E-13 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-14 | 155 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-5 | 156 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-14 | 157 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0080126 | Biological Process | ovary septum development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDIDLFKSIN SEDQMEMMVM MHMNEMPTME FSPQGINNNT NNLPQIIHDH NSSTFLNIPS 60 TNISFTNSST LVHDQESSIT LPFLENSTSS TRDYKDQVSL TSHLTFPSTK RNNSMGAMRE 120 MIFKIAAMQP IHIDPESIKP PKRKNVKISN DPQSIAARHR REKISEKMRV LQRLVPGGTK 180 MDTASMLDEA IHYMKFLKKQ VQNLEKARTV ASAGCLGFPV PMSLSGNNYN LPMGTRTYHQ 240 PYHQCIQP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 1e-54 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019257960.1 | 1e-86 | PREDICTED: transcription factor HEC2-like | ||||
TrEMBL | A0A1J6HTC6 | 3e-85 | A0A1J6HTC6_NICAT; Transcription factor hec2 | ||||
STRING | XP_009766851.1 | 7e-86 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 6e-48 | bHLH family protein |