PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01018g00118.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HB-other

Protein Properties

Length: 1466aa MW: 163891 Da PI: 5.6193

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01018g00118.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.9	1.3e-11	9	48	18	57
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 l++ + yps ++ +eLA klgLt+rq k+WF+ +R k+kk Peaxi162Scf01018g00118.1 9 LYAVDTYPSDATVAELAVKLGLTDRQLKMWFCHKRLKDKK 48 577899********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.098	1	49	IPR001356	Homeobox domain
SMART	SM00389	0.0013	2	53	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-9	5	48	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-9	9	48	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-9	10	48	IPR009057	Homeodomain-like
CDD	cd00086	2.56E-7	10	48	No hit	No description
Pfam	PF05066	3.1E-10	472	539	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.8E-5	652	696	IPR028942	WHIM1 domain
Pfam	PF15613	7.8E-15	827	899	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1466 aa Download sequence Send to blast
VTVLSWRVLY AVDTYPSDAT VAELAVKLGL TDRQLKMWFC HKRLKDKKDA TGAAVMRPCS 60 GGRGTGGRKY LGESPREDLM AAEPASDCGS GSESESDSRS GCSQFDNGDV KPTVPFRYYE 120 SRKAMERRVI SCIEAQLGEP LHKDGPALGV KFDELPPGAF GVHAVVAEHQ DRCRNSFESK 180 SYGAYDTKQV NREEQMRNEM ERQDCIRREE QKIKEEQYQR EERRVAEKRE KLLQREILSA 240 AMFRATTRRI AKESIELIED ERLELMELAA SSKGLSSIVS LDFDTLQNLE CFRESLCEFP 300 PKSVKRKMPF SIEPWIASDD NVGNLLMDSR LLAEIHIALL KLIIKDIEDV LRAPPSGLGT 360 NQYTAAHLEG GHPQIVERAY LWGFDICNWQ KQLNLLTWPE VLRQFGLSAG FGPQLKKKST 420 DRACLNDSDE IKGCEDAVSA LRSGSAAEAA VALMQEKGLK QQNRSKHRLT PGTVKFAAYH 480 VLALEGDKGL NVLDLANKIQ KSGLRDLSTS RTPDASVSVA LSRDPILFKR IAPSTYYVRP 540 AYRKDPANAE AVLSAAREEL QSYIKGSLAG QNAEEIERDD DSEGEVAEGP ELVDLGTPSD 600 ANKNNERCSI LTSPVNRKSK RSDEVSQQNG IYSAGVELRN PSKEGSEIDE STAGEPWVQR 660 LTEGEYSDLC VEERLNALVA LIYIANEGKT IRAVLEDRLD AANALKRQMW ADAQLDKRRL 720 KDGIINKFHN SSFYAATEGS QIPLEVPDSK HHEASPSTMV MDISPVVVDN VQNHHEGIPA 780 EKSLAAQETF AGQFISPIQQ NGNTAERLRM QLKSFIGHKA DDFYASRSLP LGEDRRHNQY 840 WMFAASGSSQ DPGSGRIFVE SPNGCWRLID TEEAFDSLMT SLDTRGIRES HLHIMLQEIE 900 ASFRKCARRS MSHFVTAGQH GKISRTEAAE GSSPVSDIGT DSPGSSICGM SSDGCEPSSS 960 FKIEIGKNKE EIKNSLRRYH DFQVWMWKEC LNTSISRAMR FGKKRCSPVL GICDRCLDSF 1020 FPEEDLCPSC HRIFGNFETN AEVSEKMADY SDNLENDYKN LMVSNSSRPL RIRLIKALLI 1080 LLEVHLPFEA LQSYWSEDCR KLWGLQLQNS SSAEDLLKIL TRLESVIERD HLSTNFETTK 1140 ELLGHNALSR TAASEKFACP GSVPQLPWIP LTTAAVSLRL LELDSSISYD PKRKAEFGCE 1200 IEVDLPIVEK PSSRYASLKE LQKVEPTEAD PNGQLIEESW DYLGNFPSGA RSRHVVRTRG 1260 GGRPRVRLQK GIRSTPESSR AGIRPAETMT QVLINLGEAC GQRHARGPRT LRRRRTEKKV 1320 VEEILPAYLG QNGNQQTALV LPKKRRREEF GINVERIGAA NNDSNIKAAT AFEGSGHKNT 1380 NGFRKWEPEY NNVTSNSRYD VRELTDEDGN DDNGVDDNDH DSDIYQEHGQ NHGRFVVVDG 1440 NDESNWMEDD NDDQDSGSAV GMDYMA

Sequence ? help Back to Top

Protein Sequence Length: 1466 aa Download sequence Send to blast

VTVLSWRVLY AVDTYPSDAT VAELAVKLGL TDRQLKMWFC HKRLKDKKDA TGAAVMRPCS  60
GGRGTGGRKY LGESPREDLM AAEPASDCGS GSESESDSRS GCSQFDNGDV KPTVPFRYYE  120
SRKAMERRVI SCIEAQLGEP LHKDGPALGV KFDELPPGAF GVHAVVAEHQ DRCRNSFESK  180
SYGAYDTKQV NREEQMRNEM ERQDCIRREE QKIKEEQYQR EERRVAEKRE KLLQREILSA  240
AMFRATTRRI AKESIELIED ERLELMELAA SSKGLSSIVS LDFDTLQNLE CFRESLCEFP  300
PKSVKRKMPF SIEPWIASDD NVGNLLMDSR LLAEIHIALL KLIIKDIEDV LRAPPSGLGT  360
NQYTAAHLEG GHPQIVERAY LWGFDICNWQ KQLNLLTWPE VLRQFGLSAG FGPQLKKKST  420
DRACLNDSDE IKGCEDAVSA LRSGSAAEAA VALMQEKGLK QQNRSKHRLT PGTVKFAAYH  480
VLALEGDKGL NVLDLANKIQ KSGLRDLSTS RTPDASVSVA LSRDPILFKR IAPSTYYVRP  540
AYRKDPANAE AVLSAAREEL QSYIKGSLAG QNAEEIERDD DSEGEVAEGP ELVDLGTPSD  600
ANKNNERCSI LTSPVNRKSK RSDEVSQQNG IYSAGVELRN PSKEGSEIDE STAGEPWVQR  660
LTEGEYSDLC VEERLNALVA LIYIANEGKT IRAVLEDRLD AANALKRQMW ADAQLDKRRL  720
KDGIINKFHN SSFYAATEGS QIPLEVPDSK HHEASPSTMV MDISPVVVDN VQNHHEGIPA  780
EKSLAAQETF AGQFISPIQQ NGNTAERLRM QLKSFIGHKA DDFYASRSLP LGEDRRHNQY  840
WMFAASGSSQ DPGSGRIFVE SPNGCWRLID TEEAFDSLMT SLDTRGIRES HLHIMLQEIE  900
ASFRKCARRS MSHFVTAGQH GKISRTEAAE GSSPVSDIGT DSPGSSICGM SSDGCEPSSS  960
FKIEIGKNKE EIKNSLRRYH DFQVWMWKEC LNTSISRAMR FGKKRCSPVL GICDRCLDSF  1020
FPEEDLCPSC HRIFGNFETN AEVSEKMADY SDNLENDYKN LMVSNSSRPL RIRLIKALLI  1080
LLEVHLPFEA LQSYWSEDCR KLWGLQLQNS SSAEDLLKIL TRLESVIERD HLSTNFETTK  1140
ELLGHNALSR TAASEKFACP GSVPQLPWIP LTTAAVSLRL LELDSSISYD PKRKAEFGCE  1200
IEVDLPIVEK PSSRYASLKE LQKVEPTEAD PNGQLIEESW DYLGNFPSGA RSRHVVRTRG  1260
GGRPRVRLQK GIRSTPESSR AGIRPAETMT QVLINLGEAC GQRHARGPRT LRRRRTEKKV  1320
VEEILPAYLG QNGNQQTALV LPKKRRREEF GINVERIGAA NNDSNIKAAT AFEGSGHKNT  1380
NGFRKWEPEY NNVTSNSRYD VRELTDEDGN DDNGVDDNDH DSDIYQEHGQ NHGRFVVVDG  1440
NDESNWMEDD NDDQDSGSAV GMDYMA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018629804.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X3
TrEMBL	A0A1S3XL25	0.0	A0A1S3XL25_TOBAC; homeobox-DDT domain protein RLT1-like
STRING	XP_009613460.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1