PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01016g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 13914 Da PI: 4.8258 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.8 | 5.1e-10 | 52 | 99 | 48 | 95 |
EEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 48 vkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 v+l r+++ + +++++GW++Fv gLkegD +vF+l + ++++ ++k Peaxi162Scf01016g00003.1 52 VTL--RNGQMEwnMMFSGGWSKFVTNTGLKEGDGLVFELLECNNENVKFK 99 555..444444689************************764344434444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.82E-9 | 48 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.77E-9 | 51 | 101 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-8 | 52 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-7 | 54 | 98 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.91 | 62 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MLQLNSSCKG IGHNTCERLG VTTQLNGPIS HPIIPILPPK ILQHLPANVA PVTLRNGQME 60 WNMMFSGGWS KFVTNTGLKE GDGLVFELLE CNNENVKFKV QTPDGSFLEE LLKELGEGTS 120 DNPVDIL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M1DR54 | 1e-16 | M1DR54_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400093051 | 2e-17 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |