PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf01013g00025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 285aa MW: 33137.2 Da PI: 5.4876 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.3 | 1.3e-15 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+++ r+ tf kR++g++KK +ELS+LCd+++++ii s+ Peaxi162Scf01013g00025.1 11 IQDHKTRKNTFLKRKAGLIKKISELSILCDIKACLIINDSH 51 889999******************************97665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.2E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.381 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-18 | 2 | 98 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.68E-17 | 2 | 47 | No hit | No description |
PRINTS | PR00404 | 2.0E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-14 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence Send to blast |
MGKSRVKLEL IQDHKTRKNT FLKRKAGLIK KISELSILCD IKACLIINDS HQEYIDGVDQ 60 QEIWPADSNQ VQELINLYKQ QPVGNQRKRT ENLSSFIENQ KRKVASEVEK LKTKRIKTTE 120 KYCTWDSRFN YLSEKELRNF ASVLEKKIEN MKQKLEVSKS TTNIQDSNMG SSDSQEEWDY 180 PELSNQTPCP INVYGNNIPF TYDNFFQEFT TSDFQITPSV GVNSVDYGYD LTVDNYQFGD 240 AENNWLMKHE IGGGECYNFE SSSMTMQQQQ QQQLMELLKI GVPFH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598741.1 | 5e-71 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A1J6IH84 | 6e-69 | A0A1J6IH84_NICAT; Agamous-like mads-box protein agl82 | ||||
STRING | XP_009598741.1 | 2e-70 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6342 | 12 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22590.2 | 8e-20 | AGAMOUS-like 87 |