PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01012g00013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 315aa    MW: 35910.6 Da    PI: 5.0602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01012g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-20103153155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++++GVr+++ +g+W+AeIrdp++   + r++lg+f taeeAa  +++a+ +++g
  Peaxi162Scf01012g00013.1 103 KKFRGVRQRP-WGKWAAEIRDPVK---KSRIWLGTFETAEEAAMVYDQAAIQIRG 153
                               59********.**********654...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.85E-33103160No hitNo description
Gene3DG3DSA:3.30.730.109.9E-31104161IPR001471AP2/ERF domain
SMARTSM003809.1E-38104169IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22104160IPR016177DNA-binding domain
PROSITE profilePS5103223.222104161IPR001471AP2/ERF domain
PfamPF008471.3E-12104153IPR001471AP2/ERF domain
PRINTSPR003678.1E-11105116IPR001471AP2/ERF domain
PRINTSPR003678.1E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MERSKVSQAI KKCVVHKTIS TGKSDNILTP KVVRICYTDC DATDSSSDDE QVKRHVKKYV  60
TEIRFEKQAV SCGDHVKKSS NKSNKTKKKN NTMVLKKDDN NVKKFRGVRQ RPWGKWAAEI  120
RDPVKKSRIW LGTFETAEEA AMVYDQAAIQ IRGPDALTNF IKPPLKKESV ITSISSGYDS  180
NGESENLSSP TSVLRQNNDN NVGNGTVTKR IKAEIKDDDR RMSTAVQQMV MQNNDIMLDD  240
QTLPLMDQCF LKDFFDFRSP SPLMDDVLLP DFVDEFDILP LEMNYLDGNQ ENLDVEDLEE  300
LCTWDVNDFL EDQCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-24103169468ATERF1
3gcc_A6e-24103169468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758972.11e-128PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9SUE32e-45CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1U7USC61e-127A0A1U7USC6_NICSY; ethylene-responsive transcription factor CRF3-like
STRINGXP_009758972.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-42cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]