PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01011g00014.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 696aa    MW: 77182 Da    PI: 7.8504
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01011g00014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-24124225199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD
  Peaxi162Scf01011g00014.1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGD 206
                               89****************************986445444..8999**************************************** PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               ++vF   + +++ l+v+++r+
  Peaxi162Scf01011g00014.1 207 SIVFL--RAENGDLCVGIRRA 225
                               *****..4488999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-38115227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-30117227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21123224No hitNo description
SMARTSM010199.0E-23124226IPR003340B3 DNA binding domain
PfamPF023624.5E-22124225IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239124226IPR003340B3 DNA binding domain
PfamPF065079.0E-32292375IPR010525Auxin response factor
PROSITE profilePS5174519.498610690IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MINIMNPVNK PMNEVEKSLE PQLWHACAGG MVQMPPVNSK AFYFPQGHAE HAHKNVDFGG  60
FPKIPPLILC RVSAIRYLAD TDTDEVFAKI RLVPLKGNES DVEDDVGFLG FDNKNENQDK  120
PNSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTILAKDVH GEVWKFRHIY  180
RGTPRRHLLT TGWSNFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG CGQEVPSGWN  240
TGPGNYAASL YQGFPGFLSE DEKKFIRNGQ VAKSDDGLRG KSKVRAETVT EAAKLAACGQ  300
PFEVVYYPRA STPEFVVKAS AVRSAMRVQW SSGMRFKMPF ETEDSSRISW FMGTISSVHV  360
DNPIHWPNSP WRLLQVHWDE PDLLQNVKRV SPWLVELVSN MPPIHVSPFS PPRKKLRLPQ  420
PPEFPMMGQL SMPSLLTNPL SPSSPLCCIS DNIPAGIQGA RHAQCGLSSS DLHFNKLQAG  480
LLPFGFKDLQ RAVPPPRVLK GVSFMTNFDN DENISCLLTM GNTTPTSTKR KETQKPMFML  540
FGKPILTEQQ ISLSCCSETV GNSLSNGNPE KMNLSEGSGS AILSNGPPEN NSGEVLPWYK  600
DQKPEFGLET GHCKVFMESE DVGRTLDLSV LGSYEELYKK LADMFGVKTS EMLSNVLYQD  660
FTGAVKHAGD EPFSQFVKMA RRLTILTDSG SDNIRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-711939651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784518.10.0PREDICTED: auxin response factor 16-like
RefseqXP_009784519.10.0PREDICTED: auxin response factor 16-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U7X1180.0A0A1U7X118_NICSY; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]