PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00986g00227.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 229aa    MW: 27041.4 Da    PI: 8.4342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00986g00227.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-15956148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT++Ed +lv +v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Peaxi162Scf00986g00227.1  9 RGPWTEQEDFQLVFYVNLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 56
                              89********************************************97 PP
2Myb_DNA-binding59.67.1e-1962107148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++
  Peaxi162Scf00986g00227.1  62 RGKMTPQEERLILELHSKYGNR-WSKIARKLP-GRTDNEIKNYWRTHM 107
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.446456IPR017930Myb domain
SMARTSM007173.5E-12858IPR001005SANT/Myb domain
SuperFamilySSF466891.54E-298103IPR009057Homeodomain-like
PfamPF002491.3E-13956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-201063IPR009057Homeodomain-like
CDDcd001672.02E-81156No hitNo description
PROSITE profilePS5129428.50257111IPR017930Myb domain
SMARTSM007171.1E-1861109IPR001005SANT/Myb domain
PfamPF002493.7E-1762106IPR001005SANT/Myb domain
CDDcd001671.12E-1264107No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2664110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVQEEIIRRG PWTEQEDFQL VFYVNLFGDR RWDFLAKVSG LKRTGKSCRL RWVNYLNPGL  60
KRGKMTPQEE RLILELHSKY GNRWSKIARK LPGRTDNEIK NYWRTHMRKQ AQDQRKNAFI  120
SPSSSFSNCS SNSSANSPAV DSIPITKQNK RNLETAEEKK IYNHEEAEEN QNMVYTMDEI  180
WKNVESSQET ETMSKLPVMA SPIWDYCPDS LWMTDFNYFD NQDIPFFTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-2991114105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-28711125128MYB TRANSFORMING PROTEIN
1mse_C8e-2991114105C-Myb DNA-Binding Domain
1msf_C8e-2991114105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0130447e-31BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence.
GenBankHG9754457e-31HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755187e-31HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247600.11e-118PREDICTED: transcription factor MYB48-like
SwissprotQ9LX824e-75MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1J6IP191e-116A0A1J6IP19_NICAT; Transcription factor myb48
STRINGXP_009798979.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.15e-76myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]