PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00980g00018.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 267aa MW: 30020.8 Da PI: 6.041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00980g00018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.4e-08	131	178	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peaxi162Scf00980g00018.1 131 SHSLAERARREKIGKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 178 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.05E-6	125	182	No hit	No description
SuperFamily	SSF47459	1.14E-15	125	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.665	127	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	127	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-6	131	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-9	133	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MLGRVQSSPD NHTDYNEEMS VLERQRAIFQ RLYESQQQIS SLSRQNIAQC NSLISEQIVN 60 CTQFQNFPFV EEGNCKTKNH EGEAAEVKSE IIMENDKVTS TNNLKENSTN SEVKKPDYIH 120 VRARRGQATD SHSLAERARR EKIGKKMKCL QDLVPGCNKV IGKAGMLDEI INYVQSLQKQ 180 VEFLSMKLAA SNNTDSNLFA TYMANFPTMA APSTLEIANI PAFLQNNLIQ QQQGSSIGRE 240 NCSMSFPEAF IDTSHVQVQE CQIGIAF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	2e-53	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	2e-53	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018625308.1	9e-85	PREDICTED: transcription factor BEE 2-like isoform X1
TrEMBL	M1C271	1e-84	M1C271_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400058169	6e-85	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4000	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36540.1	8e-49	BR enhanced expression 2