PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00978g00214.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 532aa    MW: 58273 Da    PI: 5.9394
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00978g00214.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-173784148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+ Ed +lvd+++++G g+W+++ ++ g+ R++k+c++rw ++l
  Peaxi162Scf00978g00214.1 37 KGPWTKAEDAILVDYITRHGEGNWSAVRKHSGLARCGKSCRLRWANHL 84
                              79******************************************9986 PP

2Myb_DNA-binding51.52.3e-1690133146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  Peaxi162Scf00978g00214.1  90 KGAFTPEEERLIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 133
                               799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1123284IPR017930Myb domain
SuperFamilySSF466898.99E-3034131IPR009057Homeodomain-like
SMARTSM007173.4E-133686IPR001005SANT/Myb domain
PfamPF002494.9E-143784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-233891IPR009057Homeodomain-like
CDDcd001675.09E-113984No hitNo description
PROSITE profilePS5129426.61285139IPR017930Myb domain
SMARTSM007171.3E-1689137IPR001005SANT/Myb domain
PfamPF002491.4E-1590133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2592138IPR009057Homeodomain-like
CDDcd001671.48E-1292133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MTSECVDRMT SKVGVDSSAV EEASGGGNAG GGVPLKKGPW TKAEDAILVD YITRHGEGNW  60
SAVRKHSGLA RCGKSCRLRW ANHLRPDLRK GAFTPEEERL IIELHAKMGN KWARMAAELP  120
GRTDNEIKNY WNTRIKRQQR AGMPMYPPDI CYQAFRENKQ NKELGTFSSA DSHPDFSPIN  180
SFEIPAVEFK TLELSQQRYP PALLDIAANS SLDIPATSLL AQGLNFSCNT RSFLSTMHPS  240
KRIRGLESWF SGLNDDFFQA CHQFENDGSL FAESLGYSSP HTDNLISVHH PAFSGVFNGS  300
HASLNGNSSS EPKWAKKLEL PSLQTQMASW GSPSPLPSLE SYDTLIQLPP SEHIDSGSLS  360
PGNSGLLDAV LYESQAFRAS KNNLHQETCD VVDDSCPDVQ ATWGTHSGPN SPLGHSAASV  420
FSEYTPIFGG SLHEPRSVAS LFGENGCKIK QEDVDLAPTD RNNDVSNHQI FAWTESCFAP  480
TVLVPQQNRV LCLTLLPFVS PPSESWAQTL LDFPPPLLQS SSQPATILRS SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32321381107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455000.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLA0A1S3YSS00.0A0A1S3YSS0_TOBAC; transcription factor GAMYB-like isoform X1
STRINGXP_009771204.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.14e-74myb domain protein 33