PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00961g00117.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 26879.5 Da PI: 6.0452 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.1 | 3.1e-13 | 98 | 145 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + kKl+K++iL +++Y+k+Lq Peaxi162Scf00961g00117.1 98 QDHVAAERNRREKMSQLFISLSKIVPGL-----KKLDKSSILGDTIDYMKELQ 145 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-11 | 98 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 99 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.18E-12 | 100 | 149 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-16 | 100 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-14 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MARMLNKGMA YTGFNQEDLK QNLSYTIEEK AQKAISYSPL ISSSGLLISF GSSSLNPAVI 60 SEEDDIASMI KYSHLEESAY QESGGNNIIY KRTPLQAQDH VAAERNRREK MSQLFISLSK 120 IVPGLKKLDK SSILGDTIDY MKELQEQVKV LEETKKNIPS AWENNDSSSS KENVNGSNQV 180 VGSNIKARIS NKSVLINIHC NKEDGMVERV LSQMEQLHLA VHDIRIMPFG LTNLDISILA 240 E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768662.1 | 3e-89 | PREDICTED: transcription factor bHLH18-like | ||||
Refseq | XP_016472308.1 | 3e-89 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A1S4A6N7 | 7e-88 | A0A1S4A6N7_TOBAC; transcription factor bHLH18-like | ||||
TrEMBL | A0A1U7VKZ0 | 7e-88 | A0A1U7VKZ0_NICSY; transcription factor bHLH18-like | ||||
STRING | XP_009768662.1 | 1e-88 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8864 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-30 | bHLH family protein |