PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00943g00310.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 281aa    MW: 31699 Da    PI: 4.8341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00943g00310.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.7e-09162227644
                               HHHHHHHHHHHHHHHHHHHCTSCC.C.............................TTS-STCHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPk.as..........................kapskKlsKaeiL 44 
                                ++ErrRR+r+N++++ Lr+++Pk  +                          + p+  ls +++L
  Peaxi162Scf00943g00310.1 162 LMAERRRRKRLNDRLSMLRSIVPKiMTcflvgkyfqfdverrnadtrieiccaAKPGLLLSTVSTL 227
                               589********************9443677777777777766666666666644444446666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.969156230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.89E-6159186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6162227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-7163187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.89E-4207248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MELTQQDLLE ELLSPRSESY STFSGEVNEV FPNGFTFDST FYQNQEFVAL NSSLLGLMTP  60
QESNFLCPNF TSQESYPILD SLINDTLPLQ VQDEYTTSNR AMLENEGLGF IANDFHVLQE  120
DLNCFSNDVK VEDATPRIMG VSNVGEKKNK VKKLKGQPSK NLMAERRRRK RLNDRLSMLR  180
SIVPKIMTCF LVGKYFQFDV ERRNADTRIE ICCAAKPGLL LSTVSTLEAL GLDVQQCVIS  240
CFSDFSLQAS CSEAREHRTI LSSEDVKQTL FKTAGYGGRC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164171ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-50HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755142e-50HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225226.11e-141PREDICTED: transcription factor bHLH93-like
TrEMBLA0A314KTP21e-140A0A314KTP2_NICAT; Transcription factor bhlh93
STRINGXP_009600953.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-43beta HLH protein 93