PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00942g00122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 379aa MW: 41586.8 Da PI: 6.8149 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.2 | 3.3e-08 | 60 | 105 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H+++p+ Peaxi162Scf00942g00122.1 60 VWMCEVCEQAAASVTCKADAAALCVTCDRDIHSAnplaqrHERIPV 105 689*******9*********************66899999998875 PP | |||||||
2 | CCT | 69.9 | 6.6e-24 | 305 | 348 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Peaxi162Scf00942g00122.1 305 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 348 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.072 | 19 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-4 | 19 | 62 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.50E-6 | 23 | 62 | No hit | No description |
PROSITE profile | PS50119 | 10.907 | 58 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-6 | 60 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.11E-7 | 61 | 105 | No hit | No description |
SMART | SM00336 | 1.6E-9 | 63 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 8.5E-18 | 305 | 347 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.638 | 305 | 347 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence Send to blast |
MGILRDGSNC FPGGWGAAAV AKLCECCRST AALVFCRTDN LFMCLGCDTR VHGGTRHERV 60 WMCEVCEQAA ASVTCKADAA ALCVTCDRDI HSANPLAQRH ERIPVVPFYD AVESVVKSTA 120 ATLLVSINNS NAMSTTTTPA TIPNCGGTIF DTSKVTTCLG HHEEYMTDPW ISTNTVTSKL 180 PVDFLFSESD NILDFDYPVS VDTHPQPHYN SANDSVVPVQ STTTNIKPLV VPFNHQEKHF 240 EIDFTQSHIK SFTTPSLSHS VSSSSLDVGV VPDGSSISEI SYPYGRSVEL GNSTSQGEKL 300 IGMDREARVL RYREKKKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTDG AGVDSDIDHI 360 FSGNDFMAPD SRYGVVPTF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608073.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A1J6JVW2 | 0.0 | A0A1J6JVW2_NICAT; Zinc finger protein constans-like 5 | ||||
STRING | XP_009608073.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57660.1 | 2e-99 | CONSTANS-like 5 |