PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00939g00235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 1190aa MW: 132453 Da PI: 4.8789 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 369.6 | 4.2e-113 | 154 | 515 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++L++cA+av++++l+ a+ l+ l+ la+++ + +++a+yf++AL +r++++ + +++ s ++ l +f+++ Peaxi162Scf00939g00235.1 154 TTLMACADAVQQNNLNVADILVRDLKMLAAQQFGAKKKVATYFAQALDQRIHGT--NQQHIVDYSY-----YTDDL-LWMIFYKT 230 68***************************************************2..1122222222.....23333.3458**** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 +P++kf++l+ NqaIl+a+++++rvH+iDf++++GlQWpaL++aLa Rp+gpp + +T++g+ +s++ ++ +++g +LakfAe++ Peaxi162Scf00939g00235.1 231 CPYIKFAYLASNQAILDAFANSNRVHVIDFSLKEGLQWPALMEALARRPGGPPAFWLTALGPLRSNNINNFQQIGGKLAKFAETV 315 ************************************************************************************* PP GRAS 173 gvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 gv+fef+ +++++l+d++ L+++p +a+aVn+v++lh+ l+ s+++e+ +L+ +k+++Pk+v+++eqea+hn++ +++ Peaxi162Scf00939g00235.1 316 GVEFEFREILVNSLADVDATVLNIRPssVDAVAVNSVFELHHALSTSGTIEK----LLNSIKEMQPKIVTITEQEANHNGHALVD 396 **************************999***************99999999....***************************** PP GRAS 256 rflealeyysalfdsleak..lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 rf ea +yys++f+s+e++ l ++s +vE+ lgr+i nvvaceg+er+erhetl++W+ r+++aGF v+l++++++qa+ Peaxi162Scf00939g00235.1 397 RFKEAWDYYSTMFESMENSevLQPNSPYSEMVEKY-LGRQINNVVACEGTERVERHETLSQWQVRMNSAGFVRVHLRSNTYNQAR 480 ****************5443377788888899888.************************************************* PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ll +++ gy+ve ++g++ l W++rpL+++SaW+ Peaxi162Scf00939g00235.1 481 SLLLQHSRAGYKVEVNDGCM-LSWNSRPLIAISAWQ 515 ***************99986.8*************6 PP | |||||||
2 | GRAS | 392.4 | 4.8e-120 | 689 | 1049 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 v +L++cAeav++++l+la+al+ l la+++ +++a+yf++AL +r+++ ++p+++ +e+ + + f Peaxi162Scf00939g00235.1 689 VVTLMACAEAVQQNNLNLADALVRDLGILAAQQSGVKKKVATYFAQALDRRIHE--------MNPQNN----IVESDFLQMHF 759 568**************************************************9........444333....4555555556* PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167 ++++P+l+f+hltaNqaIlea+ +++r+H+iDf+++qGlQWpaL+q La R++gpp +R+Tg+g+ +++++++l e+g++La+ Peaxi162Scf00939g00235.1 760 NNTCPYLRFAHLTANQAILEAFGSSNRIHVIDFSLKQGLQWPALMQDLARRADGPPVFRLTGIGPTQPDNTDALWEIGRKLAE 842 *********************************************************************************** PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 fAee+g++f+f+ + +++l+d++ ++++++p EalaVn+v++lh+ l+++++++ +L+ +k+++P++v+++eqead Peaxi162Scf00939g00235.1 843 FAEEIGLEFHFSGFKVHSLADIDASRMNIRPsnVEALAVNSVFALHHALSRPGAIDT----LLNSIKEMQPNIVTITEQEADN 921 *****************************99989***************66666666....********************** PP GRAS 249 nsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330 n++ Fl+rf e+ +yys++fds+ +++ ++ +++++ + ++lgrei n+vaceg+er+erhetl++Wr r+++aGF pv++ Peaxi162Scf00939g00235.1 922 NESIFLDRFKESWDYYSTMFDSMgNSGSAQPNSQDSEMADQYLGREIYNMVACEGSERVERHETLSQWRVRMNSAGFIPVQIH 1004 ***********************8788888889999999999***************************************** PP GRAS 331 ekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ka+ qa+ ll ++ ++gyrv + +g+l+l W +rpL+++SaW+ Peaxi162Scf00939g00235.1 1005 SKAYHQANILLFLYEyKHGYRVAKADGCLTLIWGNRPLITTSAWQ 1049 ********************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.659 | 126 | 496 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-110 | 154 | 515 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 59.717 | 662 | 1028 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-117 | 689 | 1049 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1190 aa Download sequence Send to blast |
MSSIESMMED DDSYLSNTDA IIYGTSDHSG WGGDSMISDP NIALSTTSTD DHYQLQISIA 60 AGDGGDASTI VSSVSSSSWF MNNNKQSDYQ QETRVFFVDY RATSGFAICQ NSHKEELEGP 120 ESSNRLKSCA GLELGLTLNI AGALNNGTRG RLFTTLMACA DAVQQNNLNV ADILVRDLKM 180 LAAQQFGAKK KVATYFAQAL DQRIHGTNQQ HIVDYSYYTD DLLWMIFYKT CPYIKFAYLA 240 SNQAILDAFA NSNRVHVIDF SLKEGLQWPA LMEALARRPG GPPAFWLTAL GPLRSNNINN 300 FQQIGGKLAK FAETVGVEFE FREILVNSLA DVDATVLNIR PSSVDAVAVN SVFELHHALS 360 TSGTIEKLLN SIKEMQPKIV TITEQEANHN GHALVDRFKE AWDYYSTMFE SMENSEVLQP 420 NSPYSEMVEK YLGRQINNVV ACEGTERVER HETLSQWQVR MNSAGFVRVH LRSNTYNQAR 480 SLLLQHSRAG YKVEVNDGCM LSWNSRPLIA ISAWQLAPPR SRKVTPEICK LKEKRRRFSE 540 MSSMDTMMEE DDSILSNTDA IIFGTSDHSG WAGDSMISDT NIVLSSTSTD EQYQQQISTA 600 VGDGGDDSTI VSSGASSSWF MNNNKQSEIR IFNVDFRALS GVALRSTSKN KENKGSESNQ 660 RSCTISEFHG GSLEKIGGAV NEEGSDRLVV TLMACAEAVQ QNNLNLADAL VRDLGILAAQ 720 QSGVKKKVAT YFAQALDRRI HEMNPQNNIV ESDFLQMHFN NTCPYLRFAH LTANQAILEA 780 FGSSNRIHVI DFSLKQGLQW PALMQDLARR ADGPPVFRLT GIGPTQPDNT DALWEIGRKL 840 AEFAEEIGLE FHFSGFKVHS LADIDASRMN IRPSNVEALA VNSVFALHHA LSRPGAIDTL 900 LNSIKEMQPN IVTITEQEAD NNESIFLDRF KESWDYYSTM FDSMGNSGSA QPNSQDSEMA 960 DQYLGREIYN MVACEGSERV ERHETLSQWR VRMNSAGFIP VQIHSKAYHQ ANILLFLYEY 1020 KHGYRVAKAD GCLTLIWGNR PLITTSAWQL APPKKMWSSK EMSMDTTMEE EDSYFSNTDA 1080 IFNGISDHSA WAGESLISDP NIASSSTSTD NHYHQIISTA AGSGDDDDLM VVSSSASCSW 1140 FENSNNQLID HQQEVRIFNI DFRALSEVAT VCNNNNTNKE EKKEISVRLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-54 | 159 | 1048 | 25 | 381 | Protein SCARECROW |
5b3h_D | 2e-54 | 159 | 1048 | 25 | 381 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 532 | 537 | EKRRRF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249633.3 | 1e-173 | DELLA protein GAI | ||||
Refseq | XP_022844159.1 | 1e-172 | DELLA protein GAI-like | ||||
Swissprot | Q7Y1B6 | 1e-161 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A3Q7IN05 | 0.0 | A0A3Q7IN05_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g086380.1.1 | 1e-172 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2126 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 1e-149 | GRAS family protein |
Publications ? help Back to Top | |||
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