PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00939g00210.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 445aa MW: 49406.1 Da PI: 4.9433

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00939g00210.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	249.7	1.2e-76	151	437	1	299
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 lv++L++cAeav++++l+la+ l+ ++ la ++ d+ +++a yf++AL +r+++ t++++ +e ++ f+ Peaxi162Scf00939g00210.1 151 LVKTLMACAEAVQQKNLNLADGLVRDIRILAVQQSDAKKKVANYFAQALDRRIHE-------------TNPHDIVEFSYYTDQFY 222 6899************************************************9.............444568888888899 PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e+s +lk++h+t+NqaI++a+++ +rvH+iDf++++GlQW aLl+ La R++gpp +R+T +g+ +++++ +l+e++++L+++A+ Peaxi162Scf00939g00210.1 223 ETSRYLKVGHFTTNQAIVKAFANYNRVHVIDFSLNKGLQWRALLHDLALRSGGPPAFRLTKIGPVQPDNSAALQEVEWKLSELAD 307 *********************************************************************************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv.eqeadhnses 252 ++gv+fe++ + +++l++++ L+++p Ea+aVn+vl+l++l +s++ +++++L+ + +++Pk+v+ eq +hn++ Peaxi162Scf00939g00210.1 308 SIGVEFEYREIKVSSLAEVDATILDIRPsnLEAVAVNFVLELYHLT---LSSPGAIEKLLHSIEEMQPKIVTSFrEQAENHNGSV 389 ***********************9989********997...666666668**********762666778 PP GRAS 253 Flerflealeyysalfdsl..eaklpreseerikvErellgreivnvva 299 F++rf ea + ys++fd l ++++ ++s + + vE+ lgr+i n+v Peaxi162Scf00939g00210.1 390 FVDRFNEAWHNYSTMFDFLekKETAQPNSPNSNLVEEY-LGRQIYNIVV 437 ***************5333455666777888877.******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.955	125	445	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-74	151	437	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MDTSMEEGDS FLSNTDAIIY GTSDHSGWGG DSMISDPNIV LSSTSTDDHY QQQITTAAGC 60 GGDDSMIISS SGASSSCFMN NNKQSGYKQE VRIFNVDFRA TSGVAVRDNS SNKEEKKASE 120 SSNRLKSCAG SELSLGLKIG GTVNYETSDR LVKTLMACAE AVQQKNLNLA DGLVRDIRIL 180 AVQQSDAKKK VANYFAQALD RRIHETNPHD IVEFSYYTDQ FYETSRYLKV GHFTTNQAIV 240 KAFANYNRVH VIDFSLNKGL QWRALLHDLA LRSGGPPAFR LTKIGPVQPD NSAALQEVEW 300 KLSELADSIG VEFEYREIKV SSLAEVDATI LDIRPSNLEA VAVNFVLELY HLTLSSPGAI 360 EKLLHSIEEM QPKIVTSFRE QAENHNGSVF VDRFNEAWHN YSTMFDFLEK KETAQPNSPN 420 SNLVEEYLGR QIYNIVVGTE LGLRC

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MDTSMEEGDS FLSNTDAIIY GTSDHSGWGG DSMISDPNIV LSSTSTDDHY QQQITTAAGC  60
GGDDSMIISS SGASSSCFMN NNKQSGYKQE VRIFNVDFRA TSGVAVRDNS SNKEEKKASE  120
SSNRLKSCAG SELSLGLKIG GTVNYETSDR LVKTLMACAE AVQQKNLNLA DGLVRDIRIL  180
AVQQSDAKKK VANYFAQALD RRIHETNPHD IVEFSYYTDQ FYETSRYLKV GHFTTNQAIV  240
KAFANYNRVH VIDFSLNKGL QWRALLHDLA LRSGGPPAFR LTKIGPVQPD NSAALQEVEW  300
KLSELADSIG VEFEYREIKV SSLAEVDATI LDIRPSNLEA VAVNFVLELY HLTLSSPGAI  360
EKLLHSIEEM QPKIVTSFRE QAENHNGSVF VDRFNEAWHN YSTMFDFLEK KETAQPNSPN  420
SNLVEEYLGR QIYNIVVGTE LGLRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-34	158	436	26	304	Protein SCARECROW
5b3h_A	3e-34	158	436	25	303	Protein SCARECROW
5b3h_D	3e-34	158	436	25	303	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016490697.1	1e-145	PREDICTED: DELLA protein GAI-like
Swissprot	Q7Y1B6	1e-120	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A1S4BP73	1e-144	A0A1S4BP73_TOBAC; DELLA protein GAI-like
STRING	Solyc10g086380.1.1	1e-133	(Solanum lycopersicum)
STRING	XP_009590520.1	1e-133	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12864	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-100	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]