PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00939g00006.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 306aa    MW: 33979.1 Da    PI: 5.2223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00939g00006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.8e-13152198455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h  +Er+RR+++ ++f  L  l+P +     kKl+Ka++L  Av+YIk+L+
  Peaxi162Scf00939g00006.1 152 GHVLAERKRREQLTQRFVALSVLVPGL-----KKLDKASVLGDAVKYIKQLK 198
                               58899**********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10152197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-12153202No hitNo description
SuperFamilySSF474591.07E-15153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15153211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-14154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
ETMSTDHAFI NHCQTMTQFD ELSFNNNPNF SSSLYPTIQA YSQAAGILEE KPDAFFSTSR  60
LETHQNTSNI SSSPSVICFA NSPIAITTVP KYSENLTTSV KTEVPSSGTT INFSSSAISV  120
DSDIDESQYI MQELGFDTQK KSFSRTGLKA QGHVLAERKR REQLTQRFVA LSVLVPGLKK  180
LDKASVLGDA VKYIKQLKER VKALEENSKN YSEEPVVAVK RARLLSNCDD SIYSDENSNI  240
STERSSFPDI EIRASAENVL INIYCNKQTG IIKEIFSQVE NLNLTIIRSS VMPFGDNITN  300
ITIIAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605673.13e-99PREDICTED: transcription factor bHLH18
RefseqXP_009605674.13e-99PREDICTED: transcription factor bHLH18
SwissprotQ9T0722e-44BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S4D2P93e-96A0A1S4D2P9_TOBAC; transcription factor bHLH18-like
STRINGXP_009605673.11e-98(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-46bHLH family protein