PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00929g00071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 193aa MW: 21879.7 Da PI: 10.506 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3.1e-18 | 37 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l + v+++G ++W++I++++ gR++k+c++rw + Peaxi162Scf00929g00071.1 37 KGPWSAEEDKILTRFVERYGAKNWSLISKYIK-GRSGKSCRLRWCNQ 82 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 91 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++++G++ W+tIar + gRt++ +k++w++ Peaxi162Scf00929g00071.1 91 PFSPAEDDTILAAHAKYGNR-WATIARLLH-GRTDNAVKNHWNST 133 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.846 | 32 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.23E-31 | 34 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-16 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-18 | 37 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 38 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.37E-14 | 39 | 81 | No hit | No description |
SMART | SM00717 | 4.5E-14 | 88 | 136 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.015 | 89 | 138 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.2E-14 | 91 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 91 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.55E-10 | 91 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEGSSSTCSS SSSESSLSAG TPKTPRDGNN NKPERIKGPW SAEEDKILTR FVERYGAKNW 60 SLISKYIKGR SGKSCRLRWC NQLSPEVEHR PFSPAEDDTI LAAHAKYGNR WATIARLLHG 120 RTDNAVKNHW NSTLKRRQQI RNNVSVVESP IIIIRRNDII VNVNNWDEVD PMTTLSLAPP 180 GCRRRVCRWS FGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-40 | 33 | 137 | 3 | 107 | B-MYB |
1h88_C | 1e-39 | 33 | 137 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-39 | 33 | 137 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083803.1 | 8e-76 | transcription factor MYB44-like | ||||
Refseq | XP_027153939.1 | 1e-75 | transcription factor MYB77-like | ||||
Swissprot | Q9SN12 | 5e-56 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A068UH83 | 1e-74 | A0A068UH83_COFCA; Uncharacterized protein | ||||
STRING | VIT_18s0001g11170.t01 | 3e-71 | (Vitis vinifera) | ||||
STRING | XP_009780273.1 | 3e-71 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 9e-58 | myb domain protein 77 |
Publications ? help Back to Top | |||
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