PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00926g00006.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HB-other

Protein Properties

Length: 1612aa MW: 181070 Da PI: 5.636

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00926g00006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.9e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+eL+ klgLt+rq ++WF+ rR k+k+ Peaxi162Scf00926g00006.1 20 PKRQMKTPFQLETLEKAYAMETYPSETTRAELSVKLGLTDRQLQMWFCHRRLKDKN 75 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-19	3	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-16	10	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	16	76	IPR001356	Homeobox domain
SMART	SM00389	5.9E-17	18	80	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-16	20	74	IPR001356	Homeobox domain
CDD	cd00086	1.58E-13	21	76	No hit	No description
PROSITE profile	PS50827	15.626	501	560	IPR018501	DDT domain
SMART	SM00571	2.0E-19	501	560	IPR018501	DDT domain
Pfam	PF02791	1.9E-16	503	557	IPR018501	DDT domain
Pfam	PF05066	1.1E-12	682	749	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.6E-6	866	909	IPR028942	WHIM1 domain
Pfam	PF15613	6.7E-13	1038	1110	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1612 aa Download sequence Send to blast
MEGGSEGEGN KNSSEGPKKP KRQMKTPFQL ETLEKAYAME TYPSETTRAE LSVKLGLTDR 60 QLQMWFCHRR LKDKNTLGGS EKKPHSAGSG GKRILMESPR EDFMVAEAAS DRGSGSASGS 120 GSSRFDDGDG MPTPPVRYYE SPRRAMERRV IACIEAQLGE PLREDGPILG VEFDEVPPGA 180 FGIPIETTER RDRYRHSYDS KLYGPYDANK VNAGSALSIS SALTSGHREP AEPKIVSDKY 240 GQTAALCRYD PPVDGPSKNF PIMQGNGHFV REYGVEGQSI NIMSQQSRQG RFPSSPRDND 300 VVPNNEDILQ LDRKRKIEEA RIGKDVQVNE KRMRKELEKQ DLLRRKREEQ MRKEMEKQDR 360 ERRKEEQRLI REQQRQEERF QREEKREMER RERFLQKELL RAERKKQKEE LRKERDAAKQ 420 KVAMERAMAR RIAKESMELI EDERLELMEL AASSKGLPSI ASLDYDTLQN LEAFRESLCE 480 FPPKSVQMKK PFSIQPWSAS DDNIGNLLMA WRFCLNFADI LGLWPFTLDE FVQAFHDYDS 540 RLLAEIHIAL LKLIVKDIED VARTPSGGPG TNQYSAVNPE GGHPQIVEGA YLWGFDIRNW 600 QKHLNPLTWP EVLRQFALSA GFGPPLKKKR DRVGLNDSDE TKGCEDIVST LRSGLAAENA 660 VAIMQEKGFM QQRKSRHRLT PGTVKFAAYH VLALEGDKGM NVLELADRIQ KSGLRDLSTS 720 KTPEASISVA LSRDPILFER IAPSTYNVRL AFRKDPADAD AIIAAAKEKI QRYANGFLAG 780 QNAEDEERDD DSEGEGDVAE GPEVDDLGTP YGANKNSEQC RVLDTCLVNG KSKPSVEVAQ 840 QIGVDVVGIE GSIPSQECSE IDESKGGEPW VQGLTEGEYS DLCVEERLNA LVALIGIANE 900 GNSIRVILED RLDAANALKK QMWAEAQLDK RRFKEETINK YNDSSFNAVV EGSQSPLGFP 960 KNKNQGASPA TLVKDEPGVV ADNVQNPFES VPAEKSSVAQ ETFMGQFSIQ PSANTAERSR 1020 MQLKSFIGHK AEEMYVYRSL PLGQDRRRNR YWLCVASGSS QDPGSGRIFV ESPNGRWRLI 1080 DTVEAFDCLL ASLDTRGVRE SHLHIMLQKI EVSFKERVRH NMSHWDIISK YENECRNESS 1140 AASSSSPASG SGAVSLSSTI YGTRSDSWET SSSFKIDLGR NEEEKQNSLK RYRSFQVWMW 1200 RECLSSSILC AMQYGKKRCL PLLGICSQCS DSYSSEEGIC PCRNKMIGKV DMNAEFSEQA 1260 MNSADKLKID YNNLVVSNSG SLRVRLVYVP SEALQSSWTE DSRKTWGMKL QKSLSPEDLL 1320 QILTQLEGVI KRDYLLADYE TAEELMGLCA LAKNAACEST YPGSVPQLQW IPQTGAAVAI 1380 RLLELDASIF YDPQQKMETE LKNKAEGLPV ELSFSRIIKP SLGYSSVKDL LKLEPTEVVP 1440 NGPLREENWD YLSNLPSSSS RQVVRARGGG RPRVRLQKGA ASKVPESGRA VVRPTETLTQ 1500 VLIKQGETYG QRHGRGRRTV RRRRIEKKIV EEIQPDYLGS KGSRLSLVVS PRKHGREEFD 1560 INVDRIEATN DDSISMEAAE SDDSAPEDMY DRDRVVNEDQ ESDSSESGDY SD

Sequence ? help Back to Top

Protein Sequence Length: 1612 aa Download sequence Send to blast

MEGGSEGEGN KNSSEGPKKP KRQMKTPFQL ETLEKAYAME TYPSETTRAE LSVKLGLTDR  60
QLQMWFCHRR LKDKNTLGGS EKKPHSAGSG GKRILMESPR EDFMVAEAAS DRGSGSASGS  120
GSSRFDDGDG MPTPPVRYYE SPRRAMERRV IACIEAQLGE PLREDGPILG VEFDEVPPGA  180
FGIPIETTER RDRYRHSYDS KLYGPYDANK VNAGSALSIS SALTSGHREP AEPKIVSDKY  240
GQTAALCRYD PPVDGPSKNF PIMQGNGHFV REYGVEGQSI NIMSQQSRQG RFPSSPRDND  300
VVPNNEDILQ LDRKRKIEEA RIGKDVQVNE KRMRKELEKQ DLLRRKREEQ MRKEMEKQDR  360
ERRKEEQRLI REQQRQEERF QREEKREMER RERFLQKELL RAERKKQKEE LRKERDAAKQ  420
KVAMERAMAR RIAKESMELI EDERLELMEL AASSKGLPSI ASLDYDTLQN LEAFRESLCE  480
FPPKSVQMKK PFSIQPWSAS DDNIGNLLMA WRFCLNFADI LGLWPFTLDE FVQAFHDYDS  540
RLLAEIHIAL LKLIVKDIED VARTPSGGPG TNQYSAVNPE GGHPQIVEGA YLWGFDIRNW  600
QKHLNPLTWP EVLRQFALSA GFGPPLKKKR DRVGLNDSDE TKGCEDIVST LRSGLAAENA  660
VAIMQEKGFM QQRKSRHRLT PGTVKFAAYH VLALEGDKGM NVLELADRIQ KSGLRDLSTS  720
KTPEASISVA LSRDPILFER IAPSTYNVRL AFRKDPADAD AIIAAAKEKI QRYANGFLAG  780
QNAEDEERDD DSEGEGDVAE GPEVDDLGTP YGANKNSEQC RVLDTCLVNG KSKPSVEVAQ  840
QIGVDVVGIE GSIPSQECSE IDESKGGEPW VQGLTEGEYS DLCVEERLNA LVALIGIANE  900
GNSIRVILED RLDAANALKK QMWAEAQLDK RRFKEETINK YNDSSFNAVV EGSQSPLGFP  960
KNKNQGASPA TLVKDEPGVV ADNVQNPFES VPAEKSSVAQ ETFMGQFSIQ PSANTAERSR  1020
MQLKSFIGHK AEEMYVYRSL PLGQDRRRNR YWLCVASGSS QDPGSGRIFV ESPNGRWRLI  1080
DTVEAFDCLL ASLDTRGVRE SHLHIMLQKI EVSFKERVRH NMSHWDIISK YENECRNESS  1140
AASSSSPASG SGAVSLSSTI YGTRSDSWET SSSFKIDLGR NEEEKQNSLK RYRSFQVWMW  1200
RECLSSSILC AMQYGKKRCL PLLGICSQCS DSYSSEEGIC PCRNKMIGKV DMNAEFSEQA  1260
MNSADKLKID YNNLVVSNSG SLRVRLVYVP SEALQSSWTE DSRKTWGMKL QKSLSPEDLL  1320
QILTQLEGVI KRDYLLADYE TAEELMGLCA LAKNAACEST YPGSVPQLQW IPQTGAAVAI  1380
RLLELDASIF YDPQQKMETE LKNKAEGLPV ELSFSRIIKP SLGYSSVKDL LKLEPTEVVP  1440
NGPLREENWD YLSNLPSSSS RQVVRARGGG RPRVRLQKGA ASKVPESGRA VVRPTETLTQ  1500
VLIKQGETYG QRHGRGRRTV RRRRIEKKIV EEIQPDYLGS KGSRLSLVVS PRKHGREEFD  1560
INVDRIEATN DDSISMEAAE SDDSAPEDMY DRDRVVNEDQ ESDSSESGDY SD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018629804.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X3
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A314L977	0.0	A0A314L977_NICAT; Homeobox-ddt domain protein rlt1
STRING	XP_009781785.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1