PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00919g00310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 1006aa    MW: 112110 Da    PI: 5.9171
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00919g00310.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.37e-41152229178
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                               +Cqv++C +dls+ak+yhrrhkvCe+hska  +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa
  Peaxi162Scf00919g00310.1 152 VCQVDDCGMDLSKAKDYHRRHKVCEMHSKAGRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQA 229
                               6**************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32149214IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.958150227IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-38151232IPR004333Transcription factor, SBP-box
PfamPF031108.6E-30153226IPR004333Transcription factor, SBP-box
SuperFamilySSF484035.71E-7779893IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.6E-5782893IPR020683Ankyrin repeat-containing domain
CDDcd002041.84E-6783893No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1006 aa     Download sequence    Send to blast
MEASVENRFY RTDLRGGGLG KRSLEWNLTD WKWDGDLFIA TPLGHQNPSN YQFLPVENRM  60
NHGSSNSSSS CSDEVVVVNH NEQQRRRELE KRRRVIVVEQ EQEEEGDDDS RALSLKLGGQ  120
VEAVAEKRTK FAPGGAVVAP AGGGGAVVTR AVCQVDDCGM DLSKAKDYHR RHKVCEMHSK  180
AGRALVGNVM QRFCQQCSRF HALQEFDEGK RSCRRRLAGH NKRRRKTQAE SVVNNNSLND  240
GQASGYSLMS LLKILSNVHS NGTNHTEDQD LLSHLLRSLA SQGSMNGDKG LSGLLQESSN  300
LLNNRSILRN PEIVALLTNG SQAPPRSKEH QFTNSATEMP QKSLDTNDIR LEDGRTASSQ  360
SPGNLFSNQS NSQAYVPGRE STTGRSKLMD FDLNDVYVDS DDGVEDIERS PVPECPSWLQ  420
QDSHQSSPPQ TSGNSDSASA QSPSSSSGDT QSRTDRIVFK LFGKDPSDFP FVVRAQILDW  480
LSHSPTEIES YIRPGCVVLT VYLRLPESAW EELCYDLSSS LSRLLDVPGD DGFWTKGWIY  540
IRVQNQIAFV CDGQVLLDMS LPYQSNEQST ILSVRPIAVP VSGRAHVFVK GYNLSKPSSR  600
LLCALEGNYL VPEVNNEVEE HVDGFDKDDK LQSLNFTCSV PAVTGRGFIE VEDQGLSNGF  660
FPFIIAEEDV CSEIRMLESE IELTSADYVE GQTNNMEARN QAMDFIHELG WLFHRNNLKA  720
RLEHSGPNAV LYPLKRFKWL MDFSVDHEWC AVVKKLLNIL LDGTVGAGED TFLKFALSDM  780
GLLHRAVRRN SRPLVELLLT YTPEKVADEL SSEYQSLVGV HGEFLFRPDS VGPAGLTPLH  840
VAAGIDGSED VLDALTDDPG KVAVEAWKNT RDSTGFTPED YARLRGHYSY IHLVQRKIYR  900
KASSGHIVVD IPTVVSVENS NQKEECAVTN FEISRIERRP TRPCGLCHKK LAYGTRSRSL  960
LYKPAMFSMV AMAAVCVCVA LLFRGSPEVL YIFRPFRWEM VDFGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-301522261084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19094KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474509.10.0PREDICTED: squamosa promoter-binding-like protein 1 isoform X2
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A2K9ZXK10.0A0A2K9ZXK1_PETHY; Squamosa promoter binding-like protein 12a
STRINGXP_009592086.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]