PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00919g00310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | SBP | ||||||||
Protein Properties | Length: 1006aa MW: 112110 Da PI: 5.9171 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.3 | 7e-41 | 152 | 229 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa Peaxi162Scf00919g00310.1 152 VCQVDDCGMDLSKAKDYHRRHKVCEMHSKAGRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQA 229 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-32 | 149 | 214 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.958 | 150 | 227 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.97E-38 | 151 | 232 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.6E-30 | 153 | 226 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 5.71E-7 | 779 | 893 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.6E-5 | 782 | 893 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.84E-6 | 783 | 893 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1006 aa Download sequence Send to blast |
MEASVENRFY RTDLRGGGLG KRSLEWNLTD WKWDGDLFIA TPLGHQNPSN YQFLPVENRM 60 NHGSSNSSSS CSDEVVVVNH NEQQRRRELE KRRRVIVVEQ EQEEEGDDDS RALSLKLGGQ 120 VEAVAEKRTK FAPGGAVVAP AGGGGAVVTR AVCQVDDCGM DLSKAKDYHR RHKVCEMHSK 180 AGRALVGNVM QRFCQQCSRF HALQEFDEGK RSCRRRLAGH NKRRRKTQAE SVVNNNSLND 240 GQASGYSLMS LLKILSNVHS NGTNHTEDQD LLSHLLRSLA SQGSMNGDKG LSGLLQESSN 300 LLNNRSILRN PEIVALLTNG SQAPPRSKEH QFTNSATEMP QKSLDTNDIR LEDGRTASSQ 360 SPGNLFSNQS NSQAYVPGRE STTGRSKLMD FDLNDVYVDS DDGVEDIERS PVPECPSWLQ 420 QDSHQSSPPQ TSGNSDSASA QSPSSSSGDT QSRTDRIVFK LFGKDPSDFP FVVRAQILDW 480 LSHSPTEIES YIRPGCVVLT VYLRLPESAW EELCYDLSSS LSRLLDVPGD DGFWTKGWIY 540 IRVQNQIAFV CDGQVLLDMS LPYQSNEQST ILSVRPIAVP VSGRAHVFVK GYNLSKPSSR 600 LLCALEGNYL VPEVNNEVEE HVDGFDKDDK LQSLNFTCSV PAVTGRGFIE VEDQGLSNGF 660 FPFIIAEEDV CSEIRMLESE IELTSADYVE GQTNNMEARN QAMDFIHELG WLFHRNNLKA 720 RLEHSGPNAV LYPLKRFKWL MDFSVDHEWC AVVKKLLNIL LDGTVGAGED TFLKFALSDM 780 GLLHRAVRRN SRPLVELLLT YTPEKVADEL SSEYQSLVGV HGEFLFRPDS VGPAGLTPLH 840 VAAGIDGSED VLDALTDDPG KVAVEAWKNT RDSTGFTPED YARLRGHYSY IHLVQRKIYR 900 KASSGHIVVD IPTVVSVENS NQKEECAVTN FEISRIERRP TRPCGLCHKK LAYGTRSRSL 960 LYKPAMFSMV AMAAVCVCVA LLFRGSPEVL YIFRPFRWEM VDFGTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-30 | 152 | 226 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 94 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016474509.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 isoform X2 | ||||
Swissprot | Q9S7P5 | 0.0 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A2K9ZXK1 | 0.0 | A0A2K9ZXK1_PETHY; Squamosa promoter binding-like protein 12a | ||||
STRING | XP_009592086.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1871 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |
Publications ? help Back to Top | |||
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