PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00911g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 348aa MW: 39335.6 Da PI: 8.7357 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +++++G g+W++ +++ g++R++k+c++rw +yl Peaxi162Scf00911g00012.1 14 KGPWTPEEDQKLMACIEKHGCGSWRALPAKAGLKRCGKSCRLRWINYL 61 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.868 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-23 | 11 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 65 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.513 | 66 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 0.001 | 66 | 103 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGRSPCCEKL GLKKGPWTPE EDQKLMACIE KHGCGSWRAL PAKAGLKRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRTD NEIKNYWNTH LRKRLTKMGI DPITHKPKTN 120 IFGSSQLSHM AQWENARLEA EARLVRESKK QISNNNIHDF GSLANTRLAH HQLFNQRSRI 180 NNIVPLQAKV PPFLDVLKVW QDSNWTKPKI TKDTSSSSVL DSVLTSMNNG SFDSPTSTNN 240 LFMAPNNNIP RLVDNSCLVN AGSFMENPEV EIITKEEVQT DQVQINDISS INYMSITDQS 300 SGFPSFIQGF THLENIVGSS EDNLEDNKYS YWNTILNSCT SPAGSPVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 12 | 105 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591172.1 | 1e-160 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_016468968.1 | 1e-160 | PREDICTED: transcription factor MYB39-like | ||||
TrEMBL | A0A1S3ZXA0 | 1e-159 | A0A1S3ZXA0_TOBAC; transcription factor MYB39-like | ||||
STRING | XP_009591172.1 | 1e-160 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 5e-87 | myb domain protein 16 |