PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00904g00035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 376aa    MW: 42753.3 Da    PI: 4.4587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00904g00035.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19128177255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Peaxi162Scf00904g00035.1 128 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 177
                               89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29127184IPR001471AP2/ERF domain
SMARTSM003804.8E-39128191IPR001471AP2/ERF domain
CDDcd000184.04E-33128184No hitNo description
PROSITE profilePS5103223.657128185IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21128184IPR016177DNA-binding domain
PfamPF008471.0E-12128177IPR001471AP2/ERF domain
PRINTSPR003674.3E-10129140IPR001471AP2/ERF domain
PRINTSPR003674.3E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDHHNMLCPI KYTEHRNVIK KLTHFSIKPK KNSQYNHSVP KTVRISITDP DATDSSSDEE  60
ELFGRRRIKR YVNEISIETA VVKTDVITPE NSTKAVKKRA EVALQPKQKP MKVTKEVQSQ  120
QSAGGVRKFR GVRQRPWGKW AAEIRDPARR VRLWLGTYDT AEEAAMVYDN AAIKLRGPDA  180
LTNFITPPKP KPEIDVPSNS GYESGNESRN IPSPTSVLRF RTSQSSEETE QQSQSEPELT  240
HTPSAYEPME CDQSVELVQC IEPVQQEVEE CQGETSIIPD YSNDYLPTDV PFLEDFFNFE  300
AAEQTLFEDT TSYQNDFGSS YNNETCLSSD FANDFFLFND DFGKFEESFQ DLGTLGVDDY  360
FQDIDDFSSV DSLLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21127184159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21127184462ATERF1
3gcc_A2e-21127184462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755189e-47HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264232.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A314L4X80.0A0A314L4X8_NICAT; Ethylene-responsive transcription factor crf4
STRINGXP_009596437.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-64cytokinin response factor 4