PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00894g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23154.4 Da PI: 5.1514 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45 | 1.4e-14 | 14 | 46 | 14 | 46 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgkl 46 + + ++KKA+ELSvLC+++va+iifs++ k+ Peaxi162Scf00894g00002.1 14 PRKVTSLFKKAQELSVLCNVQVAIIIFSPDEKV 46 334467************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-5 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.222 | 7 | 46 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-12 | 7 | 46 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-14 | 8 | 85 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MASNSVSKRN ALLPRKVTSL FKKAQELSVL CNVQVAIIIF SPDEKVPIMW PSETQVRQRL 60 TSYLGQSEFQ RSKKLVLHEK YLLEKLECKV EEIRKMEEKM EMESLFNELV KGMSIYELDA 120 KELRGLIKLA TLKLAKVEER KKQLEEERKK RDEERKKKLN EDDVQPAEPP VAGGESGAGP 180 DLEEGDNKNA GEEDDEHPND SN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 157 | RKKQLEEERKKRDEERKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ168513 | 1e-134 | FJ168513.1 Petunia x hybrida type I MADS box transcription factor (MADSy8) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B6DT65 | 1e-100 | B6DT65_PETHY; Type I MADS box transcription factor (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27960.1 | 2e-13 | AGAMOUS-like 90 |