PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00886g00028.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 455aa    MW: 50631.9 Da    PI: 5.8662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00886g00028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rgrWT+eEdell+++++  G g+W++ ++  g+ R++k+c++rw +yl
  Peaxi162Scf00886g00028.1 14 RGRWTAEEDELLLKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWTNYL 61
                              8*******************************99************97 PP
2Myb_DNA-binding45.51.7e-1467112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T eEde + ++   lG++ W++ a++++ gRt++++k++w+++l
  Peaxi162Scf00886g00028.1  67 RGKFTSEEDETIFKLQCSLGNR-WSLMASYLP-GRTDNEIKNYWNSHL 112
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.13961IPR017930Myb domain
SuperFamilySSF466899.17E-2911108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002494.4E-151461IPR001005SANT/Myb domain
CDDcd001671.90E-91661No hitNo description
PROSITE profilePS5129423.662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2465116IPR009057Homeodomain-like
SMARTSM007171.2E-1366114IPR001005SANT/Myb domain
PfamPF002491.6E-1267112IPR001005SANT/Myb domain
CDDcd001671.05E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MVRAPCCEKV GIKRGRWTAE EDELLLKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWTNY  60
LRPNLKRGKF TSEEDETIFK LQCSLGNRWS LMASYLPGRT DNEIKNYWNS HLRRRIYTFG  120
MKKKPIKTAA EMPNKTIVAD GLNCESLKKR GRVSRSKAKK YNNNTTTTTT AYISTLKPKS  180
SGVGAGGGAI CSEGDSIVDA GIGLDIQQHD EDHAGSAIGK PRNEETEGTN QKHINATAEK  240
QEVRNGILSF EEQGQQVLDE HILIGPHEKN VGDETVHLQQ PNYCLHDFGN QVSLSGVLEV  300
DEESHENWWS TMNSDNFLED ELWVDQCSSL DLEFGSIEEC DDISLPLVAY SLVELLGPCV  360
LVAIGKIWES VGCSPSGSRK FSSLLRLGYV QGWAVKLMHC KRKDDDDGDG GDDDEDSSCI  420
STVEFSFSTK EGFVKFRTNF CGCFGGMFCS KVSIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-26141164105C-Myb DNA-Binding Domain
1msf_C3e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT9629490.0KT962949.1 Petunia axillaris subsp. axillaris R2R3-MYB transcription factor (MYB-FL) gene, complete cds.
GenBankKT9629500.0KT962950.1 Petunia exserta truncated R2R3-MYB transcription factor (MYB-FL) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241097.11e-116PREDICTED: transcription repressor MYB4-like isoform X2
TrEMBLA0A0S3CVD30.0A0A0S3CVD3_PETAX; R2R3-MYB transcription factor
STRINGXP_009801899.11e-114(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-64myb domain protein 111