PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00848g00031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 578aa MW: 64046.7 Da PI: 6.2065 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 336.6 | 4.4e-103 | 208 | 577 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 +l++e+A+a+s++++ a ++L+rl + a+ +g++ q+l+ay++ AL++r+++ + ps+ e++s+e+ +++ ++ev Peaxi162Scf00848g00031.1 208 QLIVEAATAISDKKTDIAVEILTRLAKVANVNGSSEQKLTAYMVSALRSRVNS-------TEYPSPVLEMQSKEHRIFTQNLYEV 285 899*************************************************9.......33445555567889999999***** PP GRAS 88 sPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.skeeleetgerLa 166 sP++k+++++aN aIleav+ +++H+iDfdi+qG+Q++ Ll+aLas++ ++p +l+iT+v + + + ++++++g+ L+ Peaxi162Scf00848g00031.1 286 SPCFKLGFMAANLAILEAVADYteNKLHVIDFDIGQGGQYLHLLHALASKKtdtNKPIMLKITAVTEIMGKvDDDKVKSIGDDLK 370 *******************9876699**********************9998866677*********77668************* PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 +A+++g+ ++fnv + +++dl+ e+L v+++E+laVn++++l++l+desv++e+ rd++L+ vk+lsPkvv+vveqe++ n++ Peaxi162Scf00848g00031.1 371 ILANKVGICLSFNV-IYCKITDLSREKLGVEENEVLAVNFAFKLYKLPDESVTTENLRDALLRRVKRLSPKVVTVVEQELNWNTA 454 **************.5778****************************************************************** PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 +++r+ ea+ yy al+dslea+ +r++ r+k+E+ l+r+i n vaceg++r+er+e ++kWr+rl++aGF+p p+s+ + ++ Peaxi162Scf00848g00031.1 455 GLVARVNEACGYYGALLDSLEATESRDEMGRVKIEEG-LSRKIANSVACEGRDRVERCELFGKWRARLSMAGFGPRPMSQLVGDS 538 ***********************9*************.*******************************************9998 PP GRAS 337 aklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373 l+ + + g++v+e+sg +++gW++++L+++SaW Peaxi162Scf00848g00031.1 539 LLKKLNSGPrgNPGFTVNEQSGGVCFGWMGKTLTVASAW 577 87777766557889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.872 | 180 | 556 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-100 | 208 | 577 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MSSGFSGRAP DFYSTTTGRS TMIPMNNPQF QFQHPYHSPL SGILSDGVHR TPSFIGKRPL 60 SEFQQHQQIQ PLELYLRNVK PRNYQQIFSS DLRPSLLPID STPSTDSVAQ QAMLASYLNQ 120 VQNSLYQETE QKMMNQLHEL EKQLFDDTDD DVDDTVSVVT NSEWSETIQN LIIPSSNNNN 180 NHLSPASSST TSSCCSSIDS APVSCPKQLI VEAATAISDK KTDIAVEILT RLAKVANVNG 240 SSEQKLTAYM VSALRSRVNS TEYPSPVLEM QSKEHRIFTQ NLYEVSPCFK LGFMAANLAI 300 LEAVADYTEN KLHVIDFDIG QGGQYLHLLH ALASKKTDTN KPIMLKITAV TEIMGKVDDD 360 KVKSIGDDLK ILANKVGICL SFNVIYCKIT DLSREKLGVE ENEVLAVNFA FKLYKLPDES 420 VTTENLRDAL LRRVKRLSPK VVTVVEQELN WNTAGLVARV NEACGYYGAL LDSLEATESR 480 DEMGRVKIEE GLSRKIANSV ACEGRDRVER CELFGKWRAR LSMAGFGPRP MSQLVGDSLL 540 KKLNSGPRGN PGFTVNEQSG GVCFGWMGKT LTVASAWC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 3e-36 | 177 | 577 | 4 | 418 | Protein SHORT-ROOT |
5b3h_E | 3e-36 | 177 | 577 | 4 | 418 | Protein SHORT-ROOT |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363331.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
TrEMBL | A0A2G2WIR7 | 0.0 | A0A2G2WIR7_CAPBA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400076932 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-137 | SCARECROW-like 8 |