PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00848g00031.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 578aa    MW: 64046.7 Da    PI: 6.2065
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00848g00031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.64.4e-1032085773373
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               +l++e+A+a+s++++  a ++L+rl + a+ +g++ q+l+ay++ AL++r+++       +  ps+  e++s+e+  +++ ++ev
  Peaxi162Scf00848g00031.1 208 QLIVEAATAISDKKTDIAVEILTRLAKVANVNGSSEQKLTAYMVSALRSRVNS-------TEYPSPVLEMQSKEHRIFTQNLYEV 285
                               899*************************************************9.......33445555567889999999***** PP

                      GRAS  88 sPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.skeeleetgerLa 166
                               sP++k+++++aN aIleav+    +++H+iDfdi+qG+Q++ Ll+aLas++   ++p +l+iT+v +   + + ++++++g+ L+
  Peaxi162Scf00848g00031.1 286 SPCFKLGFMAANLAILEAVADYteNKLHVIDFDIGQGGQYLHLLHALASKKtdtNKPIMLKITAVTEIMGKvDDDKVKSIGDDLK 370
                               *******************9876699**********************9998866677*********77668************* PP

                      GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +A+++g+ ++fnv +  +++dl+ e+L v+++E+laVn++++l++l+desv++e+ rd++L+ vk+lsPkvv+vveqe++ n++
  Peaxi162Scf00848g00031.1 371 ILANKVGICLSFNV-IYCKITDLSREKLGVEENEVLAVNFAFKLYKLPDESVTTENLRDALLRRVKRLSPKVVTVVEQELNWNTA 454
                               **************.5778****************************************************************** PP

                      GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                +++r+ ea+ yy al+dslea+ +r++  r+k+E+  l+r+i n vaceg++r+er+e ++kWr+rl++aGF+p p+s+ + ++
  Peaxi162Scf00848g00031.1 455 GLVARVNEACGYYGALLDSLEATESRDEMGRVKIEEG-LSRKIANSVACEGRDRVERCELFGKWRARLSMAGFGPRPMSQLVGDS 538
                               ***********************9*************.*******************************************9998 PP

                      GRAS 337 aklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   l+  +  + g++v+e+sg +++gW++++L+++SaW
  Peaxi162Scf00848g00031.1 539 LLKKLNSGPrgNPGFTVNEQSGGVCFGWMGKTLTVASAW 577
                               87777766557889************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.872180556IPR005202Transcription factor GRAS
PfamPF035141.5E-100208577IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSSGFSGRAP DFYSTTTGRS TMIPMNNPQF QFQHPYHSPL SGILSDGVHR TPSFIGKRPL  60
SEFQQHQQIQ PLELYLRNVK PRNYQQIFSS DLRPSLLPID STPSTDSVAQ QAMLASYLNQ  120
VQNSLYQETE QKMMNQLHEL EKQLFDDTDD DVDDTVSVVT NSEWSETIQN LIIPSSNNNN  180
NHLSPASSST TSSCCSSIDS APVSCPKQLI VEAATAISDK KTDIAVEILT RLAKVANVNG  240
SSEQKLTAYM VSALRSRVNS TEYPSPVLEM QSKEHRIFTQ NLYEVSPCFK LGFMAANLAI  300
LEAVADYTEN KLHVIDFDIG QGGQYLHLLH ALASKKTDTN KPIMLKITAV TEIMGKVDDD  360
KVKSIGDDLK ILANKVGICL SFNVIYCKIT DLSREKLGVE ENEVLAVNFA FKLYKLPDES  420
VTTENLRDAL LRRVKRLSPK VVTVVEQELN WNTAGLVARV NEACGYYGAL LDSLEATESR  480
DEMGRVKIEE GLSRKIANSV ACEGRDRVER CELFGKWRAR LSMAGFGPRP MSQLVGDSLL  540
KKLNSGPRGN PGFTVNEQSG GVCFGWMGKT LTVASAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-361775774418Protein SHORT-ROOT
5b3h_E3e-361775774418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363331.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A2G2WIR70.0A0A2G2WIR7_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000769320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-137SCARECROW-like 8