PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00847g00211.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 330aa    MW: 36857.1 Da    PI: 6.5032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00847g00211.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-151462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
  Peaxi162Scf00847g00211.1 14 KGPWSPEEDAKLKEYIEKSGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62
                              79*********************************************97 PP
2Myb_DNA-binding361.6e-1169111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g ++ eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Peaxi162Scf00847g00211.1  69 GEFSDEEDRVICTLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                               789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.619962IPR017930Myb domain
SuperFamilySSF466891.53E-2611109IPR009057Homeodomain-like
SMARTSM007179.4E-121364IPR001005SANT/Myb domain
PfamPF002492.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-231569IPR009057Homeodomain-like
CDDcd001678.52E-91662No hitNo description
PROSITE profilePS5129422.02363117IPR017930Myb domain
SMARTSM007172.7E-1167115IPR001005SANT/Myb domain
PfamPF002494.0E-1069111IPR001005SANT/Myb domain
CDDcd001675.28E-870113No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KSGTGGNWIA LPHKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRVIC TLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
VSTSQKIRPL HNQHQIITNY NYYPQIPFHQ TSSLASSSPY SSTTTIPCYE STIPTLASSS  180
FLNTASASCT SGISGSTSGT VLQVQESYVG GPTTSSDGSY TNQMSQGRDQ LEYDYGVSNG  240
GENLDFHNYL YNNGIIGLED QSTSSKFLNI EAADEKPIIN ANSCYVQQEQ NPLDYSLEEI  300
KQLISTNNVT CNSNFFLDEN KIEEKVMMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2285911e-158JQ228591.1 Nicotiana tabacum ntrax mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780529.11e-151PREDICTED: transcription factor RAX2-like
RefseqXP_016489211.11e-151PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S4BYE91e-154A0A1S4BYE9_TOBAC; transcription factor RAX2-like
STRINGXP_009780529.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-77myb domain protein 36