PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00845g00120.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HB-other

Protein Properties

Length: 1770aa MW: 199149 Da PI: 6.3236

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00845g00120.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	35	89	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k++k Peaxi162Scf00845g00120.1 35 KRKMKTASQLEILEKTYATETYPSEAVRAELSVKLGLSDRQLQMWFCHRRLKDRK 89 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.6E-17	17	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.14E-15	28	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.39	30	90	IPR001356	Homeobox domain
SMART	SM00389	2.3E-16	32	94	IPR001356	Homeobox domain
CDD	cd00086	3.87E-13	33	89	No hit	No description
Pfam	PF00046	6.8E-16	35	89	IPR001356	Homeobox domain
PROSITE profile	PS50827	16.855	572	631	IPR018501	DDT domain
SMART	SM00571	4.2E-23	572	631	IPR018501	DDT domain
Pfam	PF02791	4.4E-18	573	628	IPR018501	DDT domain
Pfam	PF05066	1.3E-15	750	817	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.4E-8	970	1008	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-11	1151	1299	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1770 aa Download sequence Send to blast
MELHSSAAAT ATAGGSASSD VEKKKVLEGS EPKVKRKMKT ASQLEILEKT YATETYPSEA 60 VRAELSVKLG LSDRQLQMWF CHRRLKDRKA TTPVKRQKTE ASPVAMVSSG GGQGDEMAMS 120 GEIGKEHASG SGSRISPIGL VDLQLLQHHQ HHQQRVVHRP GTAVPRCRTE MPALKRYYEP 180 PQSVSELRAI AFVEAQLGEP LKEDGPILGM EFDPLPPGAF GAPIVAATQH KPAGRPFEAH 240 IYERPENSIK GTTRTLREYQ FLPEQPSIRS DTYEQSVSSH HYSPIEVQST RTMLSTVKSY 300 TQGSEQVASG FSFPGQIPTL NLLPQQGRQG HVTPASAEAD VVPLRSLVNV EVEANYGGLP 360 MTALESLCIP SDTRVVHDEE RLERKRKSEE ARIAREVEAH EKRIRKELEK QDMLRRKREE 420 QMRKDMERQD RERRKEEERL LREKQREEER YQREQRREME RREKFLQKES IRVEKMRLKE 480 EMRQKKEVAR LKAANVRATA RRIAKESVEL IEDEHMELME LAASKKGLPT ISSLDSETLQ 540 NLEAFRDMLN EFPPKSVCLR KPFGVEPWIC SEEAVGNLLM VWRFLITFSD VLRLWPFTLD 600 EFVQSFHDYD PRLLGEIHIA LLKLIIKDIE DIGRTPASVV GANPNSGGGH PEIVEGAYAW 660 GFDIRSWQSH LNALTWPEIL RQFALSAGFG PNLKKQSVEP AYPRDENEGN DGADIISNLR 720 SGVAAENAIA KMQQRGFSTS RRSRHRLTPG TVKFAAFHVL SLEGSKGLNI LEVAEKIQKS 780 GLRDLTTSKT PEASISAALS RDTKLFERTA PSTYCVRDPY RKDPADADAI LSGAREKIRA 840 FKNECVNGEE AEDVEKEDAE RDDESESDAA DDPEVDDLVP ELKFKETPQS HQTDRTDGMN 900 STVNASDVLR FDLTRTPEDL SLQKPTRIMH PEGFGELKPV GTSDDQTTAI DADASILYQE 960 DTVIDESNTG QKWVQGLMEG EYSDLTVEER LDALAALIGV ANEGNSIRLV LEERLEAASA 1020 LKKQIWAEAQ LDKRRFKEEF LLKVQYPSSS SNVEQLCSIT PVETRQSPLL VVDGQNEVEA 1080 VPSLQQEVMH KLPDESNNSS DVALEKTCPM QETHGGQDNS QLQSFAYVAE LSRSQLKAYI 1140 VHRAEETFVY RSLPLGQDRR RNRYWQFTTS PSRNDPGSGR IFVELRDGRW RLIDSEKTHP 1200 QTPLSKSTVA LPMYHPYGLT VKTLGYPDAY FVNYFTDVCC QEQQNRVGKD QHFDLNVPGY 1260 IFKLLDKLCT HLLDFNALMA SLDVRGLREF HLHSMLQKIE ATFKETARTH KCVEEKVENP 1320 VKEEASETAP SNDCSSNTGS PKSTICVSNC ETPEPSNSFL IGLGRNKMET ADALRRYSDL 1380 EKWMWEECVN SQLLCAKKYG RMRCKRLINI CNNCHATYFL EDNHCPCCHR TLSSTNSTYF 1440 MEHVAQCKEK LEDLYGPLCI LDSSPPLRVR LLRAQLASME ACIPPEALQP LWSEVYRRSW 1500 GLKLHIASAA GDLLQILTLL EGAIKREYLM SNYETTSEML NAVSNSNLDS MGVLPWVPHT 1560 TSAVALRLME LDSSLCYTEQ QKADSVKDKE TTDFITLKTN YADMKSHSGV LSAEASRVYE 1620 NLELDKHANS GRGRNSGRGA RSRVGGGRSQ RKVGASRSAS ARRSSTKNSD EFGHITAGKG 1680 RDRAKGRRKK GRRSVRNKQK PVKNVEIAAV EKVPVSRQQN WKEDKDRETA AAFEPPDNDS 1740 DSGTSGSGED NGQATGDDYE DLMADDYDTF

Sequence ? help Back to Top

Protein Sequence Length: 1770 aa Download sequence Send to blast

MELHSSAAAT ATAGGSASSD VEKKKVLEGS EPKVKRKMKT ASQLEILEKT YATETYPSEA  60
VRAELSVKLG LSDRQLQMWF CHRRLKDRKA TTPVKRQKTE ASPVAMVSSG GGQGDEMAMS  120
GEIGKEHASG SGSRISPIGL VDLQLLQHHQ HHQQRVVHRP GTAVPRCRTE MPALKRYYEP  180
PQSVSELRAI AFVEAQLGEP LKEDGPILGM EFDPLPPGAF GAPIVAATQH KPAGRPFEAH  240
IYERPENSIK GTTRTLREYQ FLPEQPSIRS DTYEQSVSSH HYSPIEVQST RTMLSTVKSY  300
TQGSEQVASG FSFPGQIPTL NLLPQQGRQG HVTPASAEAD VVPLRSLVNV EVEANYGGLP  360
MTALESLCIP SDTRVVHDEE RLERKRKSEE ARIAREVEAH EKRIRKELEK QDMLRRKREE  420
QMRKDMERQD RERRKEEERL LREKQREEER YQREQRREME RREKFLQKES IRVEKMRLKE  480
EMRQKKEVAR LKAANVRATA RRIAKESVEL IEDEHMELME LAASKKGLPT ISSLDSETLQ  540
NLEAFRDMLN EFPPKSVCLR KPFGVEPWIC SEEAVGNLLM VWRFLITFSD VLRLWPFTLD  600
EFVQSFHDYD PRLLGEIHIA LLKLIIKDIE DIGRTPASVV GANPNSGGGH PEIVEGAYAW  660
GFDIRSWQSH LNALTWPEIL RQFALSAGFG PNLKKQSVEP AYPRDENEGN DGADIISNLR  720
SGVAAENAIA KMQQRGFSTS RRSRHRLTPG TVKFAAFHVL SLEGSKGLNI LEVAEKIQKS  780
GLRDLTTSKT PEASISAALS RDTKLFERTA PSTYCVRDPY RKDPADADAI LSGAREKIRA  840
FKNECVNGEE AEDVEKEDAE RDDESESDAA DDPEVDDLVP ELKFKETPQS HQTDRTDGMN  900
STVNASDVLR FDLTRTPEDL SLQKPTRIMH PEGFGELKPV GTSDDQTTAI DADASILYQE  960
DTVIDESNTG QKWVQGLMEG EYSDLTVEER LDALAALIGV ANEGNSIRLV LEERLEAASA  1020
LKKQIWAEAQ LDKRRFKEEF LLKVQYPSSS SNVEQLCSIT PVETRQSPLL VVDGQNEVEA  1080
VPSLQQEVMH KLPDESNNSS DVALEKTCPM QETHGGQDNS QLQSFAYVAE LSRSQLKAYI  1140
VHRAEETFVY RSLPLGQDRR RNRYWQFTTS PSRNDPGSGR IFVELRDGRW RLIDSEKTHP  1200
QTPLSKSTVA LPMYHPYGLT VKTLGYPDAY FVNYFTDVCC QEQQNRVGKD QHFDLNVPGY  1260
IFKLLDKLCT HLLDFNALMA SLDVRGLREF HLHSMLQKIE ATFKETARTH KCVEEKVENP  1320
VKEEASETAP SNDCSSNTGS PKSTICVSNC ETPEPSNSFL IGLGRNKMET ADALRRYSDL  1380
EKWMWEECVN SQLLCAKKYG RMRCKRLINI CNNCHATYFL EDNHCPCCHR TLSSTNSTYF  1440
MEHVAQCKEK LEDLYGPLCI LDSSPPLRVR LLRAQLASME ACIPPEALQP LWSEVYRRSW  1500
GLKLHIASAA GDLLQILTLL EGAIKREYLM SNYETTSEML NAVSNSNLDS MGVLPWVPHT  1560
TSAVALRLME LDSSLCYTEQ QKADSVKDKE TTDFITLKTN YADMKSHSGV LSAEASRVYE  1620
NLELDKHANS GRGRNSGRGA RSRVGGGRSQ RKVGASRSAS ARRSSTKNSD EFGHITAGKG  1680
RDRAKGRRKK GRRSVRNKQK PVKNVEIAAV EKVPVSRQQN WKEDKDRETA AAFEPPDNDS  1740
DSGTSGSGED NGQATGDDYE DLMADDYDTF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1400	1405	RMRCKR
2	1678	1689	KGRDRAKGRRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-165	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019227825.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A314KQP3	0.0	A0A314KQP3_NICAT; Homeobox-ddt domain protein rlt2
STRING	XP_009773812.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	Homeodomain-like transcriptional regulator