PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00845g00023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 23447.2 Da PI: 9.3727 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.7e-21 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+tae+Aaka++aa+++++g Peaxi162Scf00845g00023.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEDAAKAYDAAAREFRG 72 69*******.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.6E-14 | 23 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.04E-20 | 23 | 80 | No hit | No description |
PROSITE profile | PS51032 | 24.026 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-40 | 23 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-33 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 23 | 81 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.1E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAVKDNNKVS SNVKTNGVNK EIHYRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEDAA 60 KAYDAAAREF RGPKAKTNFP LPSENQSPSH SSTVESSSGE TGVHAPLARQ ELVLTRRHGA 120 PAGGGDGRCV GGNGYPVFQH QPTVAVLPNG QPVLLFDALW RPGVVSRPQP DYRLQPVTMV 180 PSVSDCSSVV EENHYDGGVG KHKGLDLDLN LAPPMES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-23 | 23 | 81 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-23 | 23 | 81 | 5 | 64 | ATERF1 |
3gcc_A | 8e-23 | 23 | 81 | 5 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772525.1 | 1e-94 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Swissprot | Q9LW49 | 1e-95 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A1U7WE74 | 3e-93 | A0A1U7WE74_NICSY; ethylene-responsive transcription factor 4 | ||||
STRING | XP_009772525.1 | 5e-94 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-28 | erf domain protein 9 |