PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00818g00526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 311aa MW: 34418.5 Da PI: 5.9266 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.4 | 6.1e-14 | 123 | 170 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+r + f+ L + +P + kKl+Ka+iLe ++YI +Lq Peaxi162Scf00818g00526.1 123 QDHLMAERKRRERFSQLFASLAKTIPGL-----KKLDKASILEDSIKYIEQLQ 170 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.046 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-11 | 123 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-14 | 124 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.64E-11 | 125 | 174 | No hit | No description |
SuperFamily | SSF47459 | 7.46E-15 | 125 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 126 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MENTNYNNLD NNTGGEEAPF EFKNLLSEMF TSFPNQNPSS SSLKHGDTIV KEASKVALPS 60 SPSSTSSNSS SSSHNMISFG NPAESNFLGD EQDYDMMSVE KVMTLSSSTS LPKRINRSPL 120 QSQDHLMAER KRRERFSQLF ASLAKTIPGL KKLDKASILE DSIKYIEQLQ GRVRALEEAG 180 TKRNLNIEST ATPKQSLAAT SDDKTFFTKD IADDDSSMKS NPENEIKVQI VDKNVLIGIH 240 CSNSRRNIFS LIAGTMEKLH LTIHNIRVTP FNHTALNIAI LSQIDQNAVI TVQDVEKAFE 300 LALFSTPNPT D |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 133 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019249041.1 | 1e-122 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A1J6IQ15 | 1e-121 | A0A1J6IQ15_NICAT; Transcription factor bhlh18 | ||||
STRING | XP_009623662.1 | 1e-117 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12598 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-29 | bHLH family protein |