PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00818g00414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | LBD | ||||||||
Protein Properties | Length: 138aa MW: 15526.6 Da PI: 8.2785 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.3 | 1.3e-38 | 5 | 105 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+ +Gasnv k+l++++e++r d+++sl+yeA +r+++P+yG+vg+i+ l+q Peaxi162Scf00818g00414.1 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHRTYGASNVGKMLQQVQEHHRADVANSLYYEAYCRIKNPIYGCVGIISVLHQ 89 6************************************************************************************ PP DUF260 86 qleqlkaelallkeel 101 ++ +l+ +la++++e+ Peaxi162Scf00818g00414.1 90 EIYNLQCQLAKVQAEI 105 ***********99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.669 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-38 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSFVHRT YGASNVGKML QQVQEHHRAD 60 VANSLYYEAY CRIKNPIYGC VGIISVLHQE IYNLQCQLAK VQAEISVLEA QAQTQAQQGQ 120 QIELSPTISG NSFGDQNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-52 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019238658.1 | 1e-73 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 7e-46 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A1J6IQ34 | 4e-78 | A0A1J6IQ34_NICAT; Lob domain-containing protein 24 | ||||
STRING | XP_009780781.1 | 5e-71 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-47 | LOB domain-containing protein 24 |