PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00815g00357.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 469aa    MW: 52791.1 Da    PI: 5.4241
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00815g00357.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.4e-35121042103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d ++++++sws++++sfvv++ +ef++++LpkyFkh+nf+SFvRQLn+Yg++kv+ +          weF+++ F
  Peaxi162Scf00815g00357.1  12 FLSKTYDMVDDLSTNSVVSWSKSNTSFVVWNVSEFSTHILPKYFKHNNFSSFVRQLNTYGYRKVDPDC---------WEFANEGF 87 
                               9***************************************************************9987.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                kg+k+ll++i r+k++
  Peaxi162Scf00815g00357.1  88 LKGHKHLLKTISRRKNT 104
                               **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.5E-37696IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-327101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-598101IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEVVNGNSPP PFLSKTYDMV DDLSTNSVVS WSKSNTSFVV WNVSEFSTHI LPKYFKHNNF  60
SSFVRQLNTY GYRKVDPDCW EFANEGFLKG HKHLLKTISR RKNTQTQVHQ ETASQVQSVS  120
VGSCVEVGIE EDVERLKRDK SAHMEELANL WQQQQATDHR LDNVGERLQL MEQRQQQTMS  180
FLAKALQSPG FIAELFHQQN ESNRRIPGMN KKRRFPDQEE ENYAGKSVST LHDRQIVRYQ  240
PLMNEAAIAM LQKILKNNAS VTNGFLTNHA RPFQNASHTG GTSSRMSGLT LPQFPTYSQS  300
HLMSDSEIPY NSKISVIPGI QYSLSVVAGE AKVPQHPELN TLNSQIDHVS FEMSGRGMNA  360
PETFGITDLK RSETGDMSYI DTVQGIVDGV TSVDGLSADT DIDVFLDKMP KLPGINDMFW  420
DQILSASPLT EDTHDVGSVA LEDCLEMEED VPGVQDSDCN KMKHMIYLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211010127129Heat shock factor protein 1
5d5v_B1e-211010127129Heat shock factor protein 1
5d5v_D1e-211010127129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2110391e-180AC211039.2 Solanum lycopersicum chromosome 6 clone C06HBa0084A18, complete sequence.
GenBankAC2192271e-180AC219227.1 Solanum lycopersicum chromosome 6 clone C06SLm0113N10, complete sequence.
GenBankHG9755181e-180HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262765.10.0PREDICTED: heat stress transcription factor A-1-like
RefseqXP_019262766.10.0PREDICTED: heat stress transcription factor A-1-like
TrEMBLA0A314L9040.0A0A314L904_NICAT; Heat stress transcription factor a-1
STRINGPGSC0003DMT4000695500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-104heat shock factor 3