PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00809g00213.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Nin-like
Protein Properties Length: 789aa    MW: 89360.9 Da    PI: 6.6996
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00809g00213.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK69.45.2e-22302351352
                    RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                +++l+d + y +lpi+ AAke+++c+Tv+K+ CR+ G++RWP+Rkiks+
  Peaxi162Scf00809g00213.1 302 GKLRLKDFADYLHLPIELAAKEMNICPTVMKKVCRRDGLSRWPYRKIKSI 351
                               6899********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.608291371IPR003035RWP-RK domain
PfamPF020423.6E-19304351IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MDYTTATATA IVPYHDPFDD SSYVGQISLV DENPTIGLPI PSWNQQPFSS DPTIVKSDND  60
FVGDVDVYDP FVDPMLLDIP YECTNNYLVE NSTYNADEAG VFGTNCSVSQ DGVCGNSSQV  120
TVWPVSTSPS MCNNCQILRE ITLSNGLQTC KLVIYGTLGI ISHAVVEKYS MDFSSQSHES  180
SQIFEYGVSS FYTPLFRPLL LYLMIFNDGT SSVKQFLVQY FETRKHEGYI LLQDPFWNFY  240
EALGVGYDDD DHLDIDSLLQ LSPTTSRDCQ MDQQEMKNES EANGNDVRHG KIPLSAQRER  300
TGKLRLKDFA DYLHLPIELA AKEMNICPTV MKKVCRRDGL SRWPYRKIKS IKRKISKREK  360
SLSSNDVEER ASAKADIGKL EEELAKIFEA FKRVDQYWIY MKLFWLIKKY YCSIFKKRKK  420
KKKMANFEKV VGVKKVRQKD PDGWDVTMPL PGDIIEGIGE LAADDDSFVQ AKAWSELTLF  480
LGKIVGHFIW LKVRRGESTL KLRGYILVER RSNLQKRFVV KAASDERHLA VIAELTLGRC  540
TELQEMSRRM VNSGSRGYNQ MGLQYDWKTK VGTYLPDSRS TVVSSILFMP LTREYRVEAT  600
IVRTMAWFSA AVSSGIPLIF VNIQTEQISN LDRRNNSGKD LTWGSYVGNQ SVQGVRLWYL  660
PGMTEVPLEL TPAPGETRFG IDIRRTDEGF VGIYSVTKGT ASDRAGLGHL YEQANKTEQL  720
LVISRLEGKS LLPSTVSPEG LIYCCDHGDI KETLNLAVER SESIRLHIIA NFMRSFPLTL  780
VANFHSVTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415419KKRKK
2416422KRKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0095181e-139AP009518.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0067I16, complete sequence.
GenBankHG9755201e-139HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7HPR40.0A0A3Q7HPR4_SOLLC; Uncharacterized protein
STRINGSolyc08g062200.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35052027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.12e-06Nin-like family protein